Andre Rodrigues Oliveira

48 papers C 1Journal 27Unranked 20
YearRankTypeTitle / Venue / Authors
2026 J jnl
Maximum alternating clean balanced cycle decomposition and applications in rearrangement distance problems.
J. Comb. Optim.
Gabriel Siqueira, Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2025 J jnl
Partition Based Algorithms for Rearrangement Distances With Flexible Intergenic Regions.
IEEE Trans. Comput. Biol. Bioinform.
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2024 J jnl
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs.
J. Heuristics
Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2024 — conf
Heuristics based on Adjacency Graph Packing for DCJ Distance Considering Intergenic Regions.
BSB
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Zanoni Dias
2024 — conf
Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems.
RECOMB-CG
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2024 J jnl
Rearrangement Distance Problems: An updated survey.
ACM Comput. Surv.
Andre Rodrigues Oliveira, Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Ulisses Dias, Zanoni Dias
2023 — conf
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions.
ISBRA
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias
2023 J jnl
Approximation algorithms for sorting by k-cuts on signed permutations.
J. Comb. Optim.
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2023 — conf
Block Interchange and Reversal Distance on Unbalanced Genomes.
BSB
Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2023 J jnl
Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect.
IEEE ACM Trans. Comput. Biol. Bioinform.
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2023 J jnl
Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations.
J. Bioinform. Comput. Biol.
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
2023 J jnl
Reversal and Indel Distance With Intergenic Region Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2023 J jnl
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information.
J. Comput. Biol.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2022 — conf
A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time.
BSB
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2022 — conf
A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions.
RECOMB-CG
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
2022 J jnl
Algorithms for the Maximum Eulerian Cycle Decomposition Problem.
CoRR
Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid C. de Souza, Zanoni Dias
2022 J jnl
Labeled Cycle Graph for Transposition and Indel Distance.
J. Comput. Biol.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2022 J jnl
On the Complexity of Some Variations of Sorting by Transpositions.
CoRR
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2022 — conf
Sorting by k-Cuts on Signed Permutations.
RECOMB-CG
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2022 — conf
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes.
ISBRA
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2021 J jnl
An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes.
Algorithms Mol. Biol.
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
2021 J jnl
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions.
Algorithms Mol. Biol.
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Zanoni Dias
2021 J jnl
Genome Rearrangement Distance with Reversals, Transpositions, and Indels.
J. Comput. Biol.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2021 — conf
Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes.
BSB
Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Zanoni Dias
2021 J jnl
Incorporating intergenic regions into reversal and transposition distances with indels.
J. Bioinform. Comput. Biol.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2021 — conf
Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information.
AlCoB
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2021 C conf
Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions.
LAGOS
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
2021 — conf
Reversals Distance Considering Flexible Intergenic Regions Sizes.
AlCoB
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2021 J jnl
Reversals and transpositions distance with proportion restriction.
J. Bioinform. Comput. Biol.
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2021 J jnl
Sorting Permutations by Intergenic Operations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
2021 J jnl
Sorting Signed Permutations by Intergenic Reversals.
IEEE ACM Trans. Comput. Biol. Bioinform.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias
2020 — conf
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions.
AlCoB
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
2020 — conf
Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems.
BSB
Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid Carvalho de Souza, Zanoni Dias
2020 J jnl
Heuristics for the Reversal and Transposition Distance Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2020 J jnl
On the Complexity of Some Variations of Sorting by Transpositions.
J. Univers. Comput. Sci.
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2020 J jnl
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes.
J. Comput. Biol.
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2020 — conf
Sorting by Reversals and Transpositions with Proportion Restriction.
BSB
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2019 — conf
Block-Interchange Distance Considering Intergenic Regions.
BSB
Ulisses Dias, Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias
2019 J jnl
On the Complexity of Sorting by Reversals and Transpositions Problems.
J. Comput. Biol.
Andre Rodrigues Oliveira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
2019 — conf
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes.
ISBRA
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2019 J jnl
Sorting by Weighted Reversals and Transpositions.
J. Comput. Biol.
Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias
2019 J jnl
Super short operations on both gene order and intergenic sizes.
Algorithms Mol. Biol.
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2018 — conf
Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem.
AlCoB
Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2018 — conf
Sorting by Weighted Reversals and Transpositions.
BSB
Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias
2018 J jnl
Sorting signed circular permutations by super short operations.
Algorithms Mol. Biol.
Andre Rodrigues Oliveira, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2018 — conf
Super Short Reversals on Both Gene Order and Intergenic Sizes.
BSB
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
2017 J jnl
On the Sorting by Reversals and Transpositions Problem.
J. Univers. Comput. Sci.
Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
2014 — conf
An improved algorithm for the sorting by reversals and transpositions problem.
BCB
Ulisses Dias, Andre Rodrigues Oliveira, Zanoni Dias