Andre Lamurias

36 papers A* 1Misc 1Journal 20Unranked 11

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	BinChill: A Metagenomic Binning Ensemble Method. IEEE Access Oliver S. Bak, Marcus D. Jensen, Frederik M. Trudslev, Andreas Windfeld, Andre Lamurias
2023	J	`jnl`	DGH-GO: dissecting the genetic heterogeneity of complex diseases using gene ontology. BMC Bioinform. Muhammad Asif, Hugo F. M. C. Martiniano, Andre Lamurias, Samina Kausar, Francisco M. Couto
2023	A*	`conf`	Metagenomic Binning using Connectivity-constrained Variational Autoencoders. ICML Andre Lamurias, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen
2023	J	`jnl`	Multilingual bi-encoder models for biomedical entity linking. Expert Syst. J. Knowl. Eng. Zekeriya Anil Guven, Andre Lamurias
2022	J	`jnl`	Graph Neural Networks for Microbial Genome Recovery. CoRR Andre Lamurias, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen
2022	J	`jnl`	Metagenomic binning with assembly graph embeddings. Bioinform. Andre Lamurias, Mantas Sereika, Mads Albertsen, Katja Hose, Thomas Dyhre Nielsen
2021	J	`jnl`	Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer. Frontiers Res. Metrics Anal. Andre Lamurias, Sofia Jesus, Vanessa Neveu, Reza M. Salek, Francisco M. Couto
2021	J	`jnl`	Priberam Labs at the NTCIR-15 SHINRA2020-ML: Classification Task. CoRR Rúben Cardoso, Afonso Mendes, Andre Lamurias
2021	—	`ch.`	Using Neural Networks for Relation Extraction from Biomedical Literature. Artificial Neural Networks, 3rd Edition Diana F. Sousa, Andre Lamurias, Francisco M. Couto
2020	J	`jnl`	A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing. Database J. Biol. Databases Curation Diana F. Sousa, Andre Lamurias, Francisco M. Couto
2020	—	`conf`	An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi R. K. Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2020	—	`conf`	COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. NLP4COVID@EMNLP Márcia Barros, Andre Lamurias, Diana F. Sousa, Pedro Ruas, Francisco M. Couto
2020	J	`jnl`	Generating Biomedical Question Answering Corpora From Q&A Forums. IEEE Access Andre Lamurias, Diana F. Sousa, Francisco M. Couto
2020	J	`jnl`	Generating Scientific Question Answering Corpora from Q&A forums. CoRR Andre Lamurias, Diana F. Sousa, Francisco M. Couto
2020	—	`conf`	LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE. CLEF (Working Notes) Pedro Ruas, Andre Lamurias, Francisco M. Couto
2020	J	`jnl`	Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature. J. Cheminformatics Pedro Ruas, Andre Lamurias, Francisco M. Couto
2020	—	`conf`	Priberam Labs at the NTCIR-15 SHINRA2020-ML: Classification Task. NTCIR Rúben Cardoso, Afonso Mendes, Andre Lamurias
2019	—	`conf`	A Silver Standard Corpus of Human Phenotype-Gene Relations. NAACL-HLT (1) Diana F. Sousa, Andre Lamurias, Francisco M. Couto
2019	J	`jnl`	A Silver Standard Corpus of Human Phenotype-Gene Relations. CoRR Diana F. Sousa, Andre Lamurias, Francisco M. Couto
2019	J	`jnl`	BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies. BMC Bioinform. Andre Lamurias, Diana F. Sousa, Luka A. Clarke, Francisco M. Couto
2019	—	`conf`	LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition. BioNLP@ACL Andre Lamurias, Francisco M. Couto
2019	J	`jnl`	PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC Bioinform. Andre Lamurias, Pedro Ruas, Francisco M. Couto
2019	—	`ch.`	Semantic Similarity Definition. Encyclopedia of Bioinformatics and Computational Biology (1) Francisco M. Couto, Andre Lamurias
2019	—	`ch.`	Text Mining for Bioinformatics Using Biomedical Literature. Encyclopedia of Bioinformatics and Computational Biology (1) Andre Lamurias, Francisco M. Couto
2019	J	`jnl`	Using Neural Networks for Relation Extraction from Biomedical Literature. CoRR Diana F. Sousa, Andre Lamurias, Francisco M. Couto
2018	J	`jnl`	MER: a shell script and annotation server for minimal named entity recognition and linking. J. Cheminformatics Francisco M. Couto, Andre Lamurias
2017	—	`conf`	ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events. SemEval@ACL Andre Lamurias, Diana F. Sousa, Sofia Pereira, Luka A. Clarke, Francisco M. Couto
2016	—	`conf`	Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision. BioNLP (Shared Task) Andre Lamurias, Miguel J. Rodrigues, Luka A. Clarke, Francisco M. Couto
2016	—	`conf`	ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt. SemEval@NAACL-HLT Márcia Barros, Andre Lamurias, Gonçalo Figueiró, Marta Antunes, Joana Teixeira, Alexandre Pinheiro, Francisco M. Couto
2016	J	`jnl`	WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies. CoRR Miguel J. Rodrigues, Miguel Falé, Andre Lamurias, Francisco M. Couto
2015	—	`conf`	Annotating biomedical ontology terms in electronic health records using crowd-sourcing. ICBO Andre Lamurias, Vasco Pedro, Luka A. Clarke, Francisco M. Couto
2015	—	`conf`	IICE: Web Tool for Automatic Identification of Chemical Entities and Interactions. ECML/PKDD (3) Andre Lamurias, Luka A. Clarke, Francisco M. Couto
2015	J	`jnl`	Improving chemical entity recognition through h-index based semantic similarity. J. Cheminformatics Andre Lamurias, João D. Ferreira, Francisco M. Couto
2015	J	`jnl`	The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia
2014	Misc	`conf`	Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features. PACBB Andre Lamurias, João D. Ferreira, Francisco M. Couto
2014	J	`jnl`	Identifying interactions between chemical entities in biomedical text. J. Integr. Bioinform. Andre Lamurias, João D. Ferreira, Francisco M. Couto