Anders Krogh - RankMe

64 papers A 7B 2Misc 1Journal 40Unranked 12

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Riemannian generative decoder. CoRR Andreas Bjerregaard, Søren Hauberg, Anders Krogh
2024	J	`jnl`	A primer on synthetic health data. CoRR Jennifer Anne Bartell, Sander Boisen Valentin, Anders Krogh, Henning Langberg, Martin Bøgsted
2023	J	`jnl`	The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data. Bioinform. Viktoria Schuster, Anders Krogh
2021	J	`jnl`	A Manifold Learning Perspective on Representation Learning: Learning Decoder and Representations without an Encoder. Entropy Viktoria Schuster, Anders Krogh
2021	J	`jnl`	A manifold learning perspective on representation learning: Learning decoder and representations without an encoder. CoRR Viktoria Schuster, Anders Krogh
2021	J	`jnl`	The deep generative decoder: Using MAP estimates of representations. CoRR Viktoria Schuster, Anders Krogh
2020	J	`jnl`	CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data. PLoS Comput. Biol. Thilde Terkelsen, Anders Krogh, Elena Papaleo
2019	J	`jnl`	Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads. BMC Bioinform. Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg
2018	J	`jnl`	Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinform. Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak
2017	J	`jnl`	Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. PLoS Comput. Biol. Mireya Plass, Simon H. Rasmussen, Anders Krogh
2017	J	`jnl`	Sequencing and Nat. Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup
2014	J	`jnl`	Adaptable probabilistic mapping of short reads using position specific scoring matrices. BMC Bioinform. Peter Kerpedjiev, Jes Frellsen, Stinus Lindgreen, Anders Krogh
2010	J	`jnl`	miRMaid: a unified programming interface for microRNA data resources. BMC Bioinform. Anders Jacobsen Skanderup, Anders Krogh, Sakari Kauppinen, Morten Lindow
2009	J	`jnl`	CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinform. Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio
2009	J	`jnl`	Discovery of Regulatory Elements is Improved by a Discriminatory Approach. PLoS Comput. Biol. Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh
2008	J	`jnl`	BayesMD: Flexible Biological Modeling for Motif Discovery. J. Comput. Biol. Man-Hung Eric Tang, Anders Krogh, Ole Winther
2008	J	`jnl`	JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin
2008	J	`jnl`	Modeling promoter grammars with evolving hidden Markov models. Bioinform. Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh
2007	J	`jnl`	Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Res. Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
2007	J	`jnl`	An evolutionary method for learning HMM structure: prediction of protein secondary structure. BMC Bioinform. Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh
2007	J	`jnl`	Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants. PLoS Comput. Biol. Morten Lindow, Anders Jacobsen Skanderup, Sanne Nygaard, Yuan Mang, Anders Krogh
2007	J	`jnl`	MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinform. Stinus Lindgreen, Paul P. Gardner, Anders Krogh
2007	J	`jnl`	Multiple alignment and structure prediction of non-coding RNA sequences. BMC Bioinform. Stinus Lindgreen, Paul P. Gardner, Anders Krogh
2007	—	`conf`	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh
2006	J	`jnl`	A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinform. Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh
2006	J	`jnl`	Automatic generation of gene finders for eukaryotic species. BMC Bioinform. Kasper Munch, Anders Krogh
2006	J	`jnl`	Evolving the structure of hidden Markov models. IEEE Trans. Evol. Comput. Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
2006	J	`jnl`	Measuring covariation in RNA alignments: physical realism improves information measures. Bioinform. Stinus Lindgreen, Paul P. Gardner, Anders Krogh
2006	J	`jnl`	PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2006	J	`jnl`	Sampling Realistic Protein Conformations Using Local Structural Bias. PLoS Comput. Biol. Thomas Hamelryck, John T. Kent, Anders Krogh
2005	—	`conf`	An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
2005	B	`conf`	Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh
2005	J	`jnl`	Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinform. Pernille Nielsen, Anders Krogh
2004	B	`conf`	The Block Hidden Markov Model for Biological Sequence Analysis. KES Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
2004	J	`jnl`	Training HMM structure with genetic algorithm for biological sequence analysis. Bioinform. Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
2003	J	`jnl`	EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinform. Thomas Schou Larsen, Anders Krogh
2002	A	`conf`	A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio
2002	J	`jnl`	Bias of Purine Stretches in Sequenced Chromosomes. Comput. Chem. David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh
2001	—	`conf`	ISMB 2001. ISMB (Supplement of Bioinformatics) Søren Brunak, Anders Krogh
2000	—	`conf`	A General Method for Combining Predictors Tested on Protein Secondary Structure Prediction. ANNIMAB Jakob V. Hansen, Anders Krogh
1999	J	`jnl`	Hidden Neural Networks. Neural Comput. Anders Krogh, Søren Kamaric Riis
1998	A	`conf`	A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh
1998	—	`book`	Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison
1998	A	`conf`	Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB Henrik Nielsen, Anders Krogh
1997	Misc	`conf`	Hidden neural networks: a framework for HMM/NN hybrids. ICASSP Søren Kamaric Riis, Anders Krogh
1997	J	`jnl`	Nonlinear backpropagation: doing backpropagation without derivatives of the activation function. IEEE Trans. Neural Networks John A. Hertz, Anders Krogh, Benny Lautrup, Torsten Lehmann
1997	A	`conf`	Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB Anders Krogh
1996	J	`jnl`	Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Comput. Appl. Biosci. Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler
1996	J	`jnl`	Hidden Markov models for sequence analysis: extension and analysis of the basic method. Comput. Appl. Biosci. Richard Hughey, Anders Krogh
1996	J	`jnl`	Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. J. Comput. Biol. Søren Kamaric Riis, Anders Krogh
1995	—	`conf`	Learning with ensembles: How overfitting can be useful. NIPS Peter Sollich, Anders Krogh
1995	A	`conf`	Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB Anders Krogh, Graeme J. Mitchison
1995	A	`conf`	Periodic Sequence Patterns in Human Exons. ISMB Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh
1995	—	`conf`	Prediction of Beta Sheets in Proteins. NIPS Anders Krogh, Søren Kamaric Riis
1994	J	`jnl`	Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Trans. Inf. Theory Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth
1994	—	`conf`	Hidden Markov models for labeled sequences. ICPR (2) Anders Krogh
1994	—	`conf`	Neural Network Ensembles, Cross Validation, and Active Learning. NIPS Anders Krogh, Jesper Vedelsby
1993	J	`jnl`	A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther
1993	—	`conf`	Hidden Markov Models for Human Genes. NIPS Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh
1993	A	`conf`	Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler
1991	—	`conf`	A Simple Weight Decay Can Improve Generalization. NIPS Anders Krogh, John A. Hertz
1991	—	`book`	Introduction to the theory of neural computation. John A. Hertz, Anders Krogh, Richard G. Palmer
1990	—	`conf`	Dynamics of Generalization in Linear Perceptrons. NIPS Anders Krogh, John A. Hertz
1989	—	`conf`	A Cost Function for Internal Representations. NIPS Anders Krogh, C. I. Thorbergsson, John A. Hertz