Anaïs Baudot

24 papers Journal 22Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
MODIS: Multi-Omics Data Integration for Small and Unpaired Datasets.
CoRR
Daniel Lepe-Soltero, Thierry Artières, Anaïs Baudot, Paul Villoutreix
2025 J jnl
Refining Boolean models with the partial most permissive scheme.
Bioinform.
Nadine Ben Boina, Brigitte Mossé, Anaïs Baudot, Elisabeth Remy
2024 J jnl
ODAMNet: A Python package to identify molecular relationships between chemicals and rare diseases using overlap, active module and random walk approaches.
SoftwareX
Morgane Térézol, Anaïs Baudot, Ozan Ozisik
2024 J jnl
Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond.
BMC Bioinform.
Anthony Baptista, Galadriel Brière, Anaïs Baudot
2024 J jnl
Refining Boolean models with the partial most permissive scheme.
CoRR
Nadine Ben Boina, Brigitte Mossé, Anaïs Baudot, Elisabeth Remy
2023 J jnl
Tracking clusters of patients over time enables extracting information from medico-administrative databases.
J. Biomed. Informatics
Judith Lambert, Anne-Louise Leutenegger, Anne-Sophie Jannot, Anaïs Baudot
2023 J jnl
Zoo Guide to Network Embedding.
CoRR
Anthony Baptista, Rubén J. Sánchez-García, Anaïs Baudot, Ginestra Bianconi
2022 — conf
Tracking Temporal Clusters from Patient Networks.
MIE
Judith Lambert, Anne-Louise Leutenegger, Anne-Sophie Jannot, Anaïs Baudot
2022 J jnl
orsum: a Python package for filtering and comparing enrichment analyses using a simple principle.
BMC Bioinform.
Ozan Ozisik, Morgane Térézol, Anaïs Baudot
2021 J jnl
A multi-objective genetic algorithm to find active modules in multiplex biological networks.
PLoS Comput. Biol.
Elva María Novoa-del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier, Laurent Tichit, Anaïs Baudot
2021 J jnl
Universal Multilayer Network Exploration by Random Walk with Restart.
CoRR
Anthony Baptista, Aitor González, Anaïs Baudot
2020 J jnl
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach.
CoRR
Léo Pio-Lopez, Alberto Valdeolivas, Laurent Tichit, Elisabeth Remy, Anaïs Baudot
2019 J jnl
Random walk with restart on multiplex and heterogeneous biological networks.
Bioinform.
Alberto Valdeolivas, Laurent Tichit, Claire Navarro, Sophie Perrin, Gaëlle Odelin, Nicolas Levy, Pierre Cau, Elisabeth Remy, Anaïs Baudot
2018 — book
Biologie des systèmes et des réseaux pour l'étude des maladies.
Anaïs Baudot
2018 J jnl
Identifying communities from multiplex biological networks by randomized optimization of modularity.
F1000Research
Gilles Didier, Alberto Valdeolivas, Anaïs Baudot
2015 J jnl
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Comput. Biol.
Åsmund Flobak, Anaïs Baudot, Elisabeth Remy, Liv Thommesen, Denis Thieffry, Martin Kuiper, Astrid Lægreid
2015 J jnl
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Syst. Biol.
Sushil Tripathi, Åsmund Flobak, Konika Chawla, Anaïs Baudot, Torunn Bruland, Liv Thommesen, Martin Kuiper, Astrid Lægreid
2013 J jnl
Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters.
Biosyst.
Lionel Spinelli, Philippe Gambette, Charles E. Chapple, Benoît Robisson, Anaïs Baudot, Henri Garreta, Laurent Tichit, Alain Guénoche, Christine Brun
2012 J jnl
EnrichNet: network-based gene set enrichment analysis.
Bioinform.
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Reinhard Schneider, Alfonso Valencia
2010 J jnl
Extending pathways and processes using molecular interaction networks to analyse cancer genome data.
BMC Bioinform.
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia
2010 J jnl
TopoGSA: network topological gene set analysis.
Bioinform.
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia
2008 J jnl
Defining a Modular Signalling Network from the Fly Interactome.
BMC Syst. Biol.
Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun
2008 J jnl
Two local dissimilarity measures for weighted graphs with application to protein interaction networks.
Adv. Data Anal. Classif.
Jean-Baptiste Angelelli, Anaïs Baudot, Marie-Christine Brun, Alain Guénoche
2006 J jnl
PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks.
Bioinform.
Anaïs Baudot, David Martin, Pierre Mouren, François Chevenet, Alain Guénoche, Bernard Jacq, Marie-Christine Brun