Anatoly A. Sorokin

25 papers Journal 22Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
Aggregation of Multimodal ICE-MS Data into Joint Classifier Increases Quality of Brain Cancer Tissue Classification.
Data
Anatoly A. Sorokin, Denis S. Bormotov, Denis S. Zavorotnyuk, Vasily A. Eliferov, Konstantin V. Bocharov, Stanislav I. Pekov, Evgeny N. Nikolaev, Igor A. Popov
2023 J jnl
Shapley Value as a Quality Control for Mass Spectra of Human Glioblastoma Tissues.
Data
Denis S. Zavorotnyuk, Anatoly A. Sorokin, Stanislav I. Pekov, Denis S. Bormotov, Vasiliy A. Eliferov, Konstantin V. Bocharov, Eugene N. Nikolaev, Igor A. Popov
2021 J jnl
Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra.
F1000Research
Evgeny S. Zhvansky, Anatoly A. Sorokin, Denis S. Zavorotnyuk, Vsevolod Shurkhay, Vasiliy A. Eliferov, Denis S. Bormotov, Daniil G. Ivanov, Alexander A. Potapov
2021 J jnl
Lipid Profiles of Human Brain Tumors Obtained by High-Resolution Negative Mode Ambient Mass Spectrometry.
Data
Denis S. Zavorotnyuk, Stanislav I. Pekov, Anatoly A. Sorokin, Denis S. Bormotov, Nikita Levin, Evgeny S. Zhvansky, Savva Semenov, Polina Strelnikova, Konstantin V. Bocharov, Alexander Vorobiev, Alexey S. Kononikhin, Vsevolod Shurkhay, Eugene N. Nikolaev, Igor A. Popov
2021 J jnl
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Briefings Bioinform.
Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein
2021 J jnl
The software for interactive evaluation of mass spectra stability and reproducibility.
Bioinform.
Evgeny S. Zhvansky, Anatoly A. Sorokin, Denis S. Bormotov, Konstantin V. Bocharov, Denis S. Zavorotnyuk, Daniil G. Ivanov, Eugene N. Nikolaev, Igor A. Popov
2020 J jnl
DNA sequence, physics, and promoter function: Analysis of high-throughput data On T7 promoter variants activity.
J. Bioinform. Comput. Biol.
Mikhail A. Orlov, Anatoly A. Sorokin
2020 — conf
Using ASAR for Analysis of Electrogenic and Human Gut Microbial Communities.
BIOINFORMATICS
Igor Goryanin, Anatoly A. Sorokin, Olga Vasieva
2019 J jnl
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform.
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
2018 — conf
ASAR Database: An R Tool for Visual Analysis and Storage of Metagenomes.
BIOINFORMATICS
Askarbek N. Orakov, Nazgul Sakenova, Igor Goryanin, Anatoly A. Sorokin
2018 J jnl
ASAR: visual analysis of metagenomes in R.
Bioinform.
Askarbek N. Orakov, Nazgul Sakenova, Anatoly A. Sorokin, Igor Goryanin
2018 J jnl
Bacterial promoter prediction: Selection of dynamic and static physical properties of DNA for reliable sequence classification.
J. Bioinform. Comput. Biol.
Artem Ryasik, Mikhail A. Orlov, Evgenia Zykova, Timofei Ermak, Anatoly A. Sorokin
2016 J jnl
Structural distinctions of fast and slow bacterial luciferases revealed by phylogenetic analysis.
Bioinform.
Anna A. Deeva, Evgenia A. Temlyakova, Anatoly A. Sorokin, Elena V. Nemtseva, Valentina A. Kratasyuk
2015 J jnl
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .
J. Integr. Bioinform.
Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger
2015 J jnl
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.
J. Integr. Bioinform.
Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger
2014 — conf
RKappa: Statistical Sampling Suite for Kappa Models.
HSB
Anatoly A. Sorokin, Oksana Sorokina, J. Douglas Armstrong
2013 J jnl
A simulator for spatially extended kappa models.
Bioinform.
Oksana Sorokina, Anatoly A. Sorokin, J. Douglas Armstrong, Vincent Danos
2013 J jnl
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.
Bioinform.
Richard R. Adams, Allan B. Clark, Azusa Yamaguchi, Neil Hanlon, Nikos Tsorman, Shakir Ali, Galina Lebedeva, Alexey N. Goltsov, Anatoly A. Sorokin, Ozgur E. Akman, Carl Troein, Andrew J. Millar, Igor Goryanin, Stephen Gilmore
2012 J jnl
Software support for SBGN maps: SBGN-ML and LibSBGN.
Bioinform.
Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber
2011 J jnl
Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus.
BMC Syst. Biol.
Oksana Sorokina, Florence Corellou, David Dauvillée, Anatoly A. Sorokin, Igor Goryanin, Steven Ball, François-Yves Bouget, Andrew J. Millar
2009 J jnl
A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola.
BMC Syst. Biol.
Gavin H. Thomas, Jeremy Zucker, Sandy J. Macdonald, Anatoly A. Sorokin, Igor Goryanin, Angela E. Douglas
2006 J jnl
A Graphical Notation to describe the Logical Interactions of Biological Pathways.
J. Integr. Bioinform.
Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin, Peter Ghazal
2006 J jnl
Electrostatic Properties of Promoter Recognized by
J. Bioinform. Comput. Biol.
Anatoly A. Sorokin, Alexander A. Osypov, Timur R. Dzhelyadin, Petr M. Beskaravainy, Svetlana G. Kamzolova
2006 J jnl
The Pathway Editor: A tool for managing complex biological networks.
IBM J. Res. Dev.
Anatoly A. Sorokin, Kirill Paliy, Alexey Selkov, Oleg V. Demin, Serge Dronov, Peter Ghazal, Igor Goryanin
1999 J jnl
Automated analysis of interatomic contacts in proteins.
Bioinform.
Vladimir Sobolev, Anatoly A. Sorokin, Jaime Prilusky, Enrique E. Abola, Marvin Edelman