Ana T. Freitas

31 papers A 2B 1C 3Misc 1Journal 16Unranked 7
YearRankTypeTitle / Venue / Authors
2015 J jnl
The semantic web in translational medicine: current applications and future directions.
Briefings Bioinform.
Catia M. Machado, Dietrich Rebholz-Schuhmann, Ana T. Freitas, Francisco M. Couto
2014 J jnl
Data Management in Metagenomics: A Risk Management Approach.
Int. J. Digit. Curation
Filipe Ferreira, Miguel E. Coimbra, Raquel Bairrão, Ricardo Viera, Ana T. Freitas, Luís M. S. Russo, José Borbinha
2014 J jnl
slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.
Bioinform.
Francisco Fernandes, Ana T. Freitas
2013 J jnl
Enrichment analysis applied to disease prognosis.
J. Biomed. Semant.
Catia M. Machado, Ana T. Freitas, Francisco M. Couto
2013 C conf
Parallel efficient aligner of pyrosequencing reads.
EuroMPI
Miguel E. Coimbra, Francisco Fernandes, Luís M. S. Russo, Ana T. Freitas
2012 — ed.
Bioinformatics for Personalized Medicine - 10th Spanish Symposium, JBI 2010, Torremolinos, Spain, October 27-29, 2010. Revised Selected Papers
Ana T. Freitas, Arcadi Navarro
2012 J jnl
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.
Bioinform.
Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen
2012 — conf
Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy.
ITBAM
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas
2011 J jnl
Efficient alignment of pyrosequencing reads for re-sequencing applications.
BMC Bioinform.
Francisco Fernandes, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira, Ana T. Freitas
2011 J jnl
Quantitative Modeling of the
J. Bioinform. Comput. Biol.
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
2011 — conf
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism.
HISB
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
2011 J jnl
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in
Nucleic Acids Res.
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
2010 — conf
Modeling and formal verification of biological regulatory networks: An integrative approach.
BIBM Workshops
Pedro T. Monteiro, Ana T. Freitas, Delphine Ropers, Radu Mateescu, Hidde de Jong
2010 — conf
Semantic characterization of hypertrophic cardiomyopathy disease.
BIBM Workshops
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas
2010 J jnl
Unraveling Hypertrophic Cardiomyopathy Variability.
ERCIM News
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas
2010 — conf
Using graph modularity analysis to identify transcription factor binding sites.
BIBM Workshops
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
2009 J jnl
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.
BMC Bioinform.
Pedro T. Monteiro, Estelle Dumas, Bruno Besson, Radu Mateescu, Michel Page, Ana T. Freitas, Hidde de Jong
2009 J jnl
CSA: An efficient algorithm to improve circular DNA multiple alignment.
BMC Bioinform.
Francisco Fernandes, Luísa Pereira, Ana T. Freitas
2008 J jnl
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
BMC Bioinform.
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
2008 — conf
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
ISBRA
Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas
2008 A conf
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks.
ECAI
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong
2008 C conf
Temporal logic patterns for querying dynamic models of cellular interaction networks.
ECCB
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong
2008 J jnl
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in
Nucleic Acids Res.
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
2006 J jnl
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
2006 J jnl
MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Bioinform.
Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
2006 J jnl
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in
Nucleic Acids Res.
Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia
2005 B conf
A highly scalable algorithm for the extraction of CIS-regulatory regions.
APBC
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
2004 Misc conf
A parallel algorithm for the extraction of structured motifs.
SAC
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot
2004 C conf
Efficient Extraction of Structured Motifs Using Box-Links.
SPIRE
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
2003 A conf
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation.
DATE
Ana T. Freitas, Arlindo L. Oliveira
2001 — conf
Circuit partitioning techniques for power estimation using the full set of input correlations.
ICECS
Ana T. Freitas, Arlindo L. Oliveira