Ana Claudia Sima

28 papers B 2Misc 1Journal 15Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources.
Bioinform.
Yojana Gadiya, Javier Millán Acosta, Ammar Ammar, Alejandro Adriaque Lozano, Delano Wetstede, Dominik Martinát, Ana Claudia Sima, Hailiang Mei, Egon L. Willighagen, Tooba Abbassi-Daloii
2025 — conf
A User-Friendly SPARQL Query Editor Powered by Lightweight Metadata.
ESWC (Satellite Events)
Vincent Emonet, Ana Claudia Sima, Tarcisio Mendes de Farias
2025 J jnl
A user-friendly SPARQL query editor powered by lightweight metadata.
CoRR
Vincent Emonet, Ana Claudia Sima, Tarcisio Mendes de Farias
2025 — conf
An Automated Framework to generate pairs of Natural Language Questions and SPARQL Queries from Common RDF Graph Patterns.
SWAT4HCLS
Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Yamamoto Yasunori, Ana Claudia Sima, Norio Kobayashi
2025 J jnl
Federated SPARQL query performance evaluation for exploring disease model mouse: combining gene expression, orthology, and disease knowledge graphs.
BMC Medical Informatics Decis. Mak.
Tatsuya Kushida, Tarcisio Mendes de Farias, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frederic B. Bastian, Hiroshi Masuya
2025 J jnl
SPARQL-LLM: Real-Time SPARQL Query Generation from Natural Language Questions.
CoRR
Panayiotis Smeros, Vincent Emonet, Ruijie Wang, Ana Claudia Sima, Tarcisio Mendes de Farias
2024 J jnl
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.
CoRR
Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima
2024 — conf
BioDataFuse: Enhancing data interoperability through modular queries and knowledge graph construction.
SWAT4HCLS
Tooba Abbassi-Daloii, Yojana Gadiya, Ammar Ammar, Egon L. Willighagen, Ana Claudia Sima, Hasan Balci
2024 — conf
CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods.
SWAT4HCLS
Jerven T. Bolleman, Elias Crum, Iulian Dragan, Jakub Galgonek, Mark Ibberson, Tarcisio Mendes de Farias, Marek Moos, Marco Pagni, Ruben Taelman, Jirí Vondrásek, Ana Claudia Sima
2024 — conf
LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs.
HGAIS@ISWC
Vincent Emonet, Jerven T. Bolleman, Severine Duvaud, Tarcisio Mendes de Farias, Ana Claudia Sima
2024 J jnl
LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs.
CoRR
Vincent Emonet, Jerven T. Bolleman, Severine Duvaud, Tarcisio Mendes de Farias, Ana Claudia Sima
2024 J jnl
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph.
CoRR
Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
2024 — conf
SPARQL generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph.
SWAT4HCLS
Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
2023 — conf
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets.
SWAT4HCLS
Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya
2023 — conf
On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs.
SeWeBMeDA@ESWC
Ana Claudia Sima, Tarcisio Mendes de Farias
2023 J jnl
On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs.
CoRR
Ana Claudia Sima, Tarcisio Mendes de Farias
2023 — conf
Towards predicting essential proteins via federated SPARQL queries.
SWAT4HCLS
Petros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima
2022 J jnl
Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.
Distributed Parallel Databases
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2022 J jnl
Federating and querying heterogeneous and distributed Web APIs and triple stores.
CoRR
Tarcisio Mendes de Farias, Christophe Dessimoz, Aarón Ayllón-Benítez, Chen Yang, Jiao Long, Ana Claudia Sima
2021 B conf
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data.
SSDBM
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2021 J jnl
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data.
CoRR
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2021 J jnl
INODE: Building an End-to-End Data Exploration System in Practice [Extended Vision].
CoRR
Sihem Amer-Yahia, Georgia Koutrika, Frederic B. Bastian, Theofilos Belmpas, Martin Braschler, Ursin Brunner, Diego Calvanese, Maximilian Fabricius, Orest Gkini, Catherine Kosten, Davide Lanti, Antonis Litke, Hendrik Lücke-Tieke, Francesco Alessandro Massucci, Tarcisio Mendes de Farias, Alessandro Mosca, Francesco Multari, Nikolaos Papadakis, Dimitris Papadopoulos, Yogendra Patil, Aurélien Personnaz, Guillem Rull, Ana Claudia Sima, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Guohui Xiao, Kurt Stockinger
2020 J jnl
Big Data architecture for intelligent maintenance: a focus on query processing and machine learning algorithms.
J. Big Data
Claude Lehmann, Lilach Goren Huber, Thomas Horisberger, Georg Scheiba, Ana Claudia Sima, Kurt Stockinger
2019 J jnl
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL.
F1000Research
Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
2019 J jnl
Enabling semantic queries across federated bioinformatics databases.
Database J. Biol. Databases Curation
Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson-Rechavi, Christophe Dessimoz
2018 B conf
A Hybrid Approach for Alarm Verification using Stream Processing, Machine Learning and Text Analytics.
EDBT
Ana Claudia Sima, Kurt Stockinger, Katrin Affolter, Martin Braschler, Peter Monte, Lukas Kaiser
2016 — conf
Cyclone: Unified Stream and Batch Processing.
ICPP Workshops
Matús Harvan, Thomas Locher, Ana Claudia Sima
2012 Misc conf
Optimizing Parallel CFD Simulations of 2D Compressible Flows.
SYNASC
Ana Claudia Sima, Emil Slusanschi