Amit G. Deshwar

11 papers Misc 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
The evolutionary history of 2,658 cancers.
Nat.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
2018 J jnl
COSSMO: predicting competitive alternative splice site selection using deep learning.
Bioinform.
Hannes Bretschneider, Shreshth Gandhi, Amit G. Deshwar, Khalid Zuberi, Brendan J. Frey
2018 — conf
Reconstructing evolutionary trajectories of mutations in cancer.
ICLR (Workshop)
Yulia Rubanova, Ruian Shi, Roujia Li, Jeff Wintersinger, Amit G. Deshwar, Nil Sahin, Quaid Morris
2015 Misc conf
Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors.
Pacific Symposium on Biocomputing
Amit G. Deshwar, Shankar Vembu, Quaid Morris
2015 J jnl
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.
BMC Bioinform.
Catalina V. Anghel, Gerald T. Quon, Syed Haider, Francis Nguyen, Amit G. Deshwar, Quaid Morris, Paul C. Boutros
2014 J jnl
Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors.
CoRR
Amit G. Deshwar, Shankar Vembu, Quaid Morris
2014 J jnl
Inferring clonal evolution of tumors from single nucleotide somatic mutations.
BMC Bioinform.
Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris
2014 J jnl
PLIDA: cross-platform gene expression normalization using perturbed topic models.
Bioinform.
Amit G. Deshwar, Quaid Morris
2014 J jnl
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors.
CoRR
Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris
2012 J jnl
Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data
CoRR
Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris
2011 J jnl
Computational purification of tumor gene expression data.
BMC Bioinform.
Amit G. Deshwar, Gerald T. Quon, Quaid Morris