Amanda Clare

43 papers A* 2A 2B 2C 2Misc 1Journal 22Unranked 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
Heuristics for the run-length encoded Burrows-Wheeler transform alphabet ordering problem.
J. Heuristics
Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Christine Zarges
2024 J jnl
A visualization tool to explore alphabet orderings for the Burrows-Wheeler Transform.
CoRR
Lily Major, Dave Davies, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Christine Zarges
2024 J jnl
Heuristics for the Run-length Encoded Burrows-Wheeler Transform Alphabet Ordering Problem.
CoRR
Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Christine Zarges
2022 J jnl
No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study.
Bioinform.
Nicholas J. Dimonaco, Wayne Aubrey, Kim Kenobi, Amanda Clare, Christopher J. Creevey
2021 J jnl
CD2CR: Co-reference Resolution Across Documents and Domains.
CoRR
James Ravenscroft, Arie Cattan, Amanda Clare, Ido Dagan, Maria Liakata
2021 A conf
CD\^2CR: Co-reference resolution across documents and domains.
EACL
James Ravenscroft, Amanda Clare, Arie Cattan, Ido Dagan, Maria Liakata
2021 J jnl
On the complexity of haplotyping a microbial community.
Bioinform.
Samuel M. Nicholls, Wayne Aubrey, Kurt De Grave, Leander Schietgat, Christopher J. Creevey, Amanda Clare
2020 — conf
Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations.
PPSN (1)
Lily Major, Amanda Clare, Jacqueline W. Daykin, Benjamin Mora, Leonel Jose Peña Gamboa, Christine Zarges
2020 J jnl
Measuring prominence of scientific work in online news as a proxy for impact.
CoRR
James Ravenscroft, Amanda Clare, Maria Liakata
2019 J jnl
Enhanced string factoring from alphabet orderings.
Inf. Process. Lett.
Amanda Clare, Jacqueline W. Daykin
2019 — conf
Evolutionary search techniques for the Lyndon factorization of biosequences.
GECCO (Companion)
Amanda Clare, Jacqueline W. Daykin, Thomas Mills, Christine Zarges
2018 J jnl
Enhanced string factoring from alphabet orderings.
CoRR
Amanda Clare, Jacqueline W. Daykin
2018 — conf
HarriGT: A Tool for Linking News to Science.
ACL (4)
James Ravenscroft, Amanda Clare, Maria Liakata
2017 J jnl
Replicating complex agent based models, a formidable task.
Environ. Model. Softw.
Elizabeth Donkin, Peter Dennis, Andrey Ustalakov, John Warren, Amanda Clare
2016 B conf
Applying Core Scientific Concepts to Context-Based Citation Recommendation.
LREC
Daniel Duma, Maria Liakata, Amanda Clare, James Ravenscroft, Ewan Klein
2016 J jnl
Goldilocks: a tool for identifying genomic regions that are 'just right'.
Bioinform.
Samuel M. Nicholls, Amanda Clare, Joshua C. Randall
2016 J jnl
Rhetorical Classification of Anchor Text for Citation Recommendation.
D Lib Mag.
Daniel Duma, Ewan Klein, Maria Liakata, James Ravenscroft, Amanda Clare
2015 — conf
Automatically Geotagging Articles in the Welsh Newspapers Online Collection.
SGAI Conf.
Sean Sapstead, Illtud Daniel, Amanda Clare
2013 — conf
Partridge: An Effective System for the Automatic Cassification of the Types of Academic Papers.
SGAI Conf.
James Ravenscroft, Maria Liakata, Amanda Clare
2012 J jnl
AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratory.
Bioinform.
Andrew Sparkes, Amanda Clare
2011 — conf
Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications.
SePublica
Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann
2010 — ch.
Inductive Queries for a Drug Designing Robot Scientist.
Inductive Databases and Constraint-Based Data Mining
Ross D. King, Amanda C. Schierz, Amanda Clare, Jem J. Rowland, Andrew Sparkes, Siegfried Nijssen, Jan Ramon
2009 J jnl
The Robot Scientist Adam.
Computer
Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir
2008 A conf
The EXACT description of biomedical protocols.
ISMB
Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare
2007 J jnl
Locational distribution of gene functional classes in
BMC Bioinform.
Michael C. Riley, Amanda Clare, Ross D. King
2007 — ch.
Logic and the Automatic Acquisition of Scientific Knowledge: An Application to Functional Genomics.
Computational Discovery of Scientific Knowledge
Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe
2006 — conf
An ontology for a Robot Scientist.
ISMB (Supplement of Bioinformatics)
Larisa N. Soldatova, Amanda Clare, Andrew Sparkes, Ross D. King
2006 — conf
Decision Trees for Hierarchical Multilabel Classification: A Case Study in Functional Genomics.
PKDD
Hendrik Blockeel, Leander Schietgat, Jan Struyf, Saso Dzeroski, Amanda Clare
2006 J jnl
Functional bioinformatics for
Bioinform.
Amanda Clare, Andreas Karwath, Helen Ougham, Ross D. King
2006 J jnl
Functional bioinformatics for
Bioinform.
Amanda Clare, Andreas Karwath, Helen Ougham, Ross D. King
2005 Misc conf
Hierarchical Multi-classification with Predictive Clustering Trees in Functional Genomics.
EPIA
Jan Struyf, Saso Dzeroski, Hendrik Blockeel, Amanda Clare
2005 — ch.
Integration of Genomic and Phenotypic Data.
Data Analysis and Visualization in Genomics and Proteomics
Amanda Clare
2005 B conf
The Robot Scientist Project.
Discovery Science
Ross D. King, Michael Young, Amanda Clare, Kenneth Whelan, Jem J. Rowland
2004 J jnl
Confirmation of data mining based predictions of protein function.
Bioinform.
Ross D. King, Paul H. Wise, Amanda Clare
2004 A* conf
Scalable Multi-Relational Association Mining.
ICDM
Amanda Clare, Hugh E. Williams, Nicholas Lester
2003 C conf
Data Mining the Yeast Genome in a Lazy Functional Language.
PADL
Amanda Clare, Ross D. King
2003 C conf
Predicting gene function in Saccharomyces cerevisiae.
ECCB
Amanda Clare, Ross D. King
2002 J jnl
How well do we understand the clusters found in microarray data?
Silico Biol.
Amanda Clare, Ross D. King
2002 J jnl
Machine learning of functional class from phenotype data.
Bioinform.
Amanda Clare, Ross D. King
2001 J jnl
A natural language system for retrieval of captioned images.
Nat. Lang. Eng.
David Elworthy, Tony Rose, Amanda Clare, Aaron C. W. Kotcheff
2001 — conf
Knowledge Discovery in Multi-label Phenotype Data.
PKDD
Amanda Clare, Ross D. King
2001 J jnl
The utility of different representations of protein sequence for predicting functional class.
Bioinform.
Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe
2000 A* conf
Genome scale prediction of protein functional class from sequence using data mining.
KDD
Ross D. King, Andreas Karwath, Amanda Clare, Luc Dehaspe