Allan Peter Davis

21 papers Journal 20Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Jolene Wiegers, Daniela Sciaky, Fern Barkalow, Brent Wyatt, Melissa Strong, Roy McMorran, Sakib Abrar, Carolyn J. Mattingly
2023 J jnl
Comparative Toxicogenomics Database (CTD): update 2023.
Nucleic Acids Res.
Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Carolyn J. Mattingly
2021 J jnl
Comparative Toxicogenomics Database (CTD): update 2021.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2019 J jnl
The Comparative Toxicogenomics Database: update 2019.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2017 J jnl
The Comparative Toxicogenomics Database: update 2017.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Benjamin L. King, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2016 J jnl
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Database J. Biol. Databases Curation
Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu
2016 J jnl
BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Database J. Biol. Databases Curation
Jiao Li, Yueping Sun, Robin J. Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Thomas C. Wiegers, Zhiyong Lu
2015 J jnl
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Thomas C. Wiegers, Carolyn J. Mattingly
2014 J jnl
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
2013 J jnl
A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin J. Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed Enayetallah, Carolyn J. Mattingly
2013 J jnl
The Comparative Toxicogenomics Database: update 2013.
Nucleic Acids Res.
Allan Peter Davis, Cynthia G. Murphy, Robin J. Johnson, Jean M. Lay, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2012 J jnl
Collaborative biocuration - text-mining development task for document prioritization for curation.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
2012 J jnl
Disease model curation improvements at Mouse Genome Informatics.
Database J. Biol. Databases Curation
Susan M. Bello, Joel E. Richardson, Allan Peter Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig
2012 J jnl
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Michael C. Rosenstein, Carolyn J. Mattingly
2012 J jnl
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Robin J. Johnson, Kelley Lennon-Hopkins, Daniela Sciaky, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2011 J jnl
The Comparative Toxicogenomics Database: update 2011.
Nucleic Acids Res.
Allan Peter Davis, Benjamin L. King, Susan Mockus, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2011 J jnl
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Cynthia G. Murphy, Carolyn J. Mattingly
2011 — conf
Waiting for a Robust Disease Ontology: A Merger of OMIM and MeSH as a Practical Interim Solution.
ICBO
Susan M. Bello, Allan Peter Davis, Thomas C. Wiegers, Mary E. Dolan, Cynthia L. Smith, Joel E. Richardson, Judith A. Blake, Carolyn J. Mattingly, Janan T. Eppig
2009 J jnl
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks.
Nucleic Acids Res.
Allan Peter Davis, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2009 J jnl
Genetic and environmental pathways to complex diseases.
BMC Syst. Biol.
Julia M. Gohlke, Reuben Thomas, Yonqing Zhang, Michael C. Rosenstein, Allan Peter Davis, Cynthia G. Murphy, Kevin G. Becker, Carolyn J. Mattingly, Christopher J. Portier
2009 J jnl
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).
BMC Bioinform.
Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly