Alla L. Lapidus

15 papers B 1Journal 13
YearRankTypeTitle / Venue / Authors
2020 J jnl
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
BMC Bioinform.
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
2020 J jnl
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
BMC Bioinform.
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
2020 J jnl
Extending rnaSPAdes functionality for hybrid transcriptome assembly.
BMC Bioinform.
Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus
2020 J jnl
MGnify: the microbiome analysis resource in 2020.
Nucleic Acids Res.
Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn
2020 J jnl
Metaviral SPAdes: assembly of viruses from metagenomic data.
Bioinform.
Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
2019 J jnl
IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction.
J. Comput. Biol.
Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov
2019 — ch.
Sequence Analysis.
Encyclopedia of Bioinformatics and Computational Biology (3)
Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus
2016 J jnl
plasmidSPAdes: assembling plasmids from whole genome sequencing data.
Bioinform.
Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner
2016 J jnl
rnaQUAST: a quality assessment tool for
Bioinform.
Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski
2015 J jnl
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.
Bioinform.
Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner
2015 J jnl
IgSimulator: a versatile immunosequencing simulator.
Bioinform.
Yana Safonova, Alla L. Lapidus, Jennie Lill
2014 J jnl
ExSPAnder: a universal repeat resolver for DNA fragment assembly.
Bioinform.
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
2013 B conf
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.
RECOMB
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013 J jnl
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.
J. Comput. Biol.
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2009 J jnl
Frameshift detection in prokaryotic genomic sequences.
Int. J. Bioinform. Res. Appl.
Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky