Alistair G. Rust

27 papers B 4C 3Misc 1Journal 9Unranked 10

Year	Rank	Type	Title / Venue / Authors
2013	J	`jnl`	Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes. Bioinform. Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G. Rust, David J. Adams
2013	—	`conf`	Mutational Genomics for Cancer Pathway Discovery. PRIB Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders
2012	—	`conf`	Improving Transcription Factor Binding Site Predictions by Using Randomised Negative Examples. IPCAT Faisal Ibne Rezwan, Yi Sun, Neil Davey, Rod Adams, Alistair G. Rust, Mark Robinson
2012	C	`conf`	Using Varying Negative Examples to Improve Computational Predictions of Transcription Factor Binding Sites. EANN Faisal Ibne Rezwan, Yi Sun, Neil Davey, Rod Adams, Alistair G. Rust, Mark Robinson
2011	—	`conf`	Effect of Using Varying Negative Examples in Transcription Factor Binding Site Predictions. EvoBio Faisal Ibne Rezwan, Yi Sun, Neil Davey, Rod Adams, Alistair G. Rust, Mark Robinson
2010	C	`conf`	Using Randomised Vectors in Transcription Factor Binding Site Predictions. ICMLA Faisal Ibne Rezwan, Yi Sun, Neil Davey, Rod Adams, Alistair G. Rust, Mark Robinson
2009	J	`jnl`	Integrating genomic binding site predictions using real-valued meta classifiers. Neural Comput. Appl. Yi Sun, Mark Robinson, Rod Adams, Rene te Boekhorst, Alistair G. Rust, Neil Davey
2009	J	`jnl`	Using pre & post-processing methods to improve binding site predictions. Pattern Recognit. Yi Sun, Cristina González Castellano, Mark Robinson, Rod Adams, Alistair G. Rust, Neil Davey
2008	J	`jnl`	Combining experts in order to identify binding sites in yeast and mouse genomic data. Neural Networks Mark Robinson, Cristina González Castellano, Faisal Ibne Rezwan, Rod Adams, Neil Davey, Alistair G. Rust, Yi Sun
2008	—	`conf`	Prediction of Binding Sites in the Mouse Genome Using Support Vector Machines. ICANN (2) Yi Sun, Mark Robinson, Rod Adams, Alistair G. Rust, Neil Davey
2008	J	`jnl`	Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics. PLoS Comput. Biol. Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich
2007	C	`conf`	Predicting Binding Sites in the Mouse Genome. ICMLA Yi Sun, Mark Robinson, Rod Adams, Neil Davey, Alistair G. Rust
2007	—	`conf`	Using Real-Valued Meta Classifiers to Integrate and Contextualize Binding Site Predictions. ICANNGA (1) Mark Robinson, Offer Sharabi, Yi Sun, Rod Adams, Rene te Boekhorst, Alistair G. Rust, Neil Davey
2006	Misc	`conf`	Improving Computational Predictions of Cis- Regulatory Binding Sites. Pacific Symposium on Biocomputing Mark Robinson, Yi Sun, Rene te Boekhorst, Paul Kaye, Rod Adams, Neil Davey, Alistair G. Rust
2006	J	`jnl`	Transcription Binding Site Prediction Using Markov Models. J. Bioinform. Comput. Biol. Irina I. Abnizova, Alistair G. Rust, Mark Robinson, Rene te Boekhorst, Walter R. Gilks
2006	—	`conf`	Using Feature Selection Filtering Methods for Binding Site Predictions. IEEE ICCI Yi Sun, Mark Robinson, Rod Adams, Rene te Boekhorst, Alistair G. Rust, Neil Davey
2006	B	`conf`	Using sampling methods to improve binding site predictions. ESANN Yi Sun, Mark Robinson, Rod Adams, Rene te Boekhorst, Alistair G. Rust, Neil Davey
2005	B	`conf`	Using real-valued meta classifiers to integrate binding site predictions. IJCNN Yi Sun, Mark Robinson, Rod Adams, Paul Kaye, Alistair G. Rust, Neil Davey
2004	B	`conf`	Design of spatially extended neural networks for specific applications. IJCNN Rod Adams, Rene te Boekhorst, Alistair G. Rust, Paul Kaye, Maria J. Schilstra
2004	—	`conf`	Integrating Binding Site Predictions Using Non-linear Classification Methods. Deterministic and Statistical Methods in Machine Learning Yi Sun, Mark Robinson, Rod Adams, Paul Kaye, Alistair G. Rust, Neil Davey
2003	J	`jnl`	Ensembl 2002: accommodating comparative genomics. Nucleic Acids Res. Michele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas A. Down, Richard Durbin, Eduardo Eyras, James G. R. Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, Vivek Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alistair G. Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney
2002	J	`jnl`	A finite state automaton model for multi-neuron simulations. Neurocomputing Maria J. Schilstra, Alistair G. Rust, Rod Adams, Hamid Bolouri
2002	J	`jnl`	The Ensembl genome database project. Nucleic Acids Res. Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas A. Down, Richard Durbin, Eduardo Eyras, James G. R. Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alistair G. Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp
2001	—	`conf`	Towards Computational Neural Systems through Developmental Evolution. Emergent Neural Computational Architectures Based on Neuroscience Alistair G. Rust, Rod Adams, Stella J. George, Hamid Bolouri
2000	—	`conf`	Image Redundancy Reduction for Neural Network Classification Using Discrete Cosine Transforms. IJCNN (3) Zhengjun Pan, Alistair G. Rust, Hamid Bolouri
1998	B	`conf`	Molecular Self-Organization in the Development Model for the Evolution of Large-scale Artificial Neural Networks. ICONIP Hamid Bolouri, Rod Adams, Stella J. George, Alistair G. Rust
1997	—	`conf`	Designing Development Rules for Artificial Evolution. ICANNGA Alistair G. Rust, Rod Adams, Stella J. George, Hamid Bolouri