Alison L. Marsden

63 papers C 1Misc 1Journal 49Unranked 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Data-driven bifurcation handling in physics-based reduced-order vascular hemodynamic models. Comput. Methods Programs Biomed. Natalia L. Rubio, Eric F. Darve, Alison L. Marsden
2026	J	`jnl`	FalconBC: Flow matching for Amortized inference of Latent-CONditioned physiologic Boundary Conditions. CoRR Chloe H. Choi, Alison L. Marsden, Daniele E. Schiavazzi
2026	J	`jnl`	On the performance of multi-fidelity and reduced-dimensional neural emulators for inference of physiological boundary conditions. Comput. Biol. Medicine Chloe H. Choi, Andrea Zanoni, Daniele E. Schiavazzi, Alison L. Marsden
2025	J	`jnl`	Assessment of Aortic Dissection Remodeling With Patient-Specific Fluid-Structure Interaction Models. IEEE Trans. Biomed. Eng. Kathrin Bäumler, Malte Rolf-Pissarczyk, Richard Schussnig, Thomas-Peter Fries, Gabriel Mistelbauer, Martin R. Pfaller, Alison L. Marsden, Dominik Fleischmann, Gerhard A. Holzapfel
2025	J	`jnl`	Data-Driven Bifurcation Handling in Physics-Based Reduced-Order Vascular Hemodynamic Models. CoRR Natalia L. Rubio, Eric F. Darve, Alison L. Marsden
2025	J	`jnl`	Deformable registration and generative modelling of aortic anatomies by auto-decoders and neural ODEs. CoRR Riccardo Tenderini, Luca Pegolotti, Fanwei Kong, Stefano Pagani, Francesco Regazzoni, Alison L. Marsden, Simone Deparis
2025	J	`jnl`	Hybrid physics-based and data-driven modeling of vascular bifurcation pressure differences. Comput. Biol. Medicine Natalia L. Rubio, Luca Pegolotti, Martin R. Pfaller, Eric F. Darve, Alison L. Marsden
2025	J	`jnl`	Neural Active Manifolds: Nonlinear Dimensionality Reduction for Uncertainty Quantification. J. Sci. Comput. Andrea Zanoni, Gianluca Geraci, Matteo Salvador, Alison L. Marsden, Daniele E. Schiavazzi
2025	J	`jnl`	On the performance of multi-fidelity and reduced-dimensional neural emulators for inference of physiologic boundary conditions. CoRR Chloe H. Choi, Andrea Zanoni, Daniele E. Schiavazzi, Alison L. Marsden
2025	J	`jnl`	Optimal patient allocation for echocardiographic assessments. CoRR Bozhi Sun, Seda Tierney, Jeffrey A. Feinstein, Frederick Damen, Alison L. Marsden, Daniele E. Schiavazzi
2025	J	`jnl`	Personalized and uncertainty-aware coronary hemodynamics simulations: From Bayesian estimation to improved multi-fidelity uncertainty quantification. Comput. Methods Programs Biomed. Karthik Menon, Andrea Zanoni, Muhammad Owais Khan, Gianluca Geraci, Koen Nieman, Daniele E. Schiavazzi, Alison L. Marsden
2025	J	`jnl`	Validation of CTA-based closed-loop coronary artery flow simulations against intravascular Doppler velocity and pressure measurements. Comput. Methods Programs Biomed. Anahita Abbasnejad Seresti, Alison L. Marsden, Andrew M. Kahn, Ryan R. Reeves, Ehtisham Mahmud, Belal Al Khiami, Lawrence Ang, Muhammad Owais Khan
2025	J	`jnl`	svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations. J. Open Source Softw. Karthik Menon, Jakob Richter, Martin R. Pfaller, Jonathan Pham, Emilin M. Mathew, Kaitlin E. Harold, Nicholas C. Dorn, Aekaansh Verma, Alison L. Marsden
2024	—	`conf`	A Novel LSTM and Graph Neural Networks Approach for Cardiovascular Simulations. BHI Angelica Iacovelli, Luca Pegolotti, Matteo Salvador, Edoardo Stoppa, Marco D. Santambrogio, Alison L. Marsden
2024	J	`jnl`	Bayesian Windkessel calibration using optimized 0D surrogate models. CoRR Jakob Richter, Jonas Nitzler, Luca Pegolotti, Karthik Menon, Jonas Biehler, Wolfgang A. Wall, Daniele E. Schiavazzi, Alison L. Marsden, Martin R. Pfaller
2024	J	`jnl`	Bayesian inference of mean velocity fields and turbulence models from flow MRI. CoRR Alexandros Kontogiannis, Priya J. Nair, Michael Loecher, Daniel B. Ennis, Alison L. Marsden, Matthew P. Juniper
2024	J	`jnl`	FSGe: A fast and strongly-coupled 3D fluid-solid-growth interaction method. CoRR Martin R. Pfaller, Marcos Latorre, Erica L. Schwarz, Fannie M. Gerosa, Jason M. Szafron, Jay D. Humphrey, Alison L. Marsden
2024	J	`jnl`	Hybrid Physics-Based and Data-Driven Modeling of Vascular Bifurcation Pressure Differences. CoRR Natalia L. Rubio, Luca Pegolotti, Martin R. Pfaller, Eric F. Darve, Alison L. Marsden
2024	J	`jnl`	Learning reduced-order models for cardiovascular simulations with graph neural networks. Comput. Biol. Medicine Luca Pegolotti, Martin R. Pfaller, Natalia L. Rubio, Ke Ding, Rita Brugarolas Brufau, Eric Darve, Alison L. Marsden
2024	J	`jnl`	Liquid Fourier Latent Dynamics Networks for fast GPU-based numerical simulations in computational cardiology. CoRR Matteo Salvador, Alison L. Marsden
2024	J	`jnl`	NeurAM: nonlinear dimensionality reduction for uncertainty quantification through neural active manifolds. CoRR Andrea Zanoni, Gianluca Geraci, Matteo Salvador, Alison L. Marsden, Daniele E. Schiavazzi
2024	J	`jnl`	Personalized and uncertainty-aware coronary hemodynamics simulations: From Bayesian estimation to improved multi-fidelity uncertainty quantification. CoRR Karthik Menon, Andrea Zanoni, Muhammad Owais Khan, Gianluca Geraci, Koen Nieman, Daniele E. Schiavazzi, Alison L. Marsden
2024	J	`jnl`	Quantification and Visualization of CT Myocardial Perfusion Imaging to Detect Ischemia-Causing Coronary Arteries. IEEE Trans. Medical Imaging Muhammad Owais Khan, Anahita Abbasnejad Seresti, Karthik Menon, Alison L. Marsden, Koen Nieman
2024	J	`jnl`	SDF4CHD: Generative modeling of cardiac anatomies with congenital heart defects. Medical Image Anal. Fanwei Kong, Sascha Stocker, Perry S. Choi, Michael R. Ma, Daniel B. Ennis, Alison L. Marsden
2024	J	`jnl`	Virtual Shape-Editing of Patient-Specific Vascular Models Using Regularized Kelvinlets. IEEE Trans. Biomed. Eng. Jonathan Pham, Fanwei Kong, Doug L. James, Alison L. Marsden
2023	J	`jnl`	A Fluid-Solid-Growth Solver for Cardiovascular Modeling. CoRR Erica L. Schwarz, Martin R. Pfaller, Jason M. Szafron, Marcos Latorre, Stephanie E. Lindsey, Christopher K. Breuer, Jay D. Humphrey, Alison L. Marsden
2023	J	`jnl`	A Modular Framework for Implicit 3D-0D Coupling in Cardiac Mechanics. CoRR Aaron L. Brown, Matteo Salvador, Lei Shi, Martin R. Pfaller, Zinan Hu, Kaitlin E. Harold, Tzung K. Hsiai, Vijay Vedula, Alison L. Marsden
2023	J	`jnl`	A Probabilistic Neural Twin for Treatment Planning in Peripheral Pulmonary Artery Stenosis. CoRR John D. Lee, Jakob Richter, Martin R. Pfaller, Jason M. Szafron, Karthik Menon, Andrea Zanoni, Michael R. Ma, Jeffrey A. Feinstein, Jacqueline Kreutzer, Alison L. Marsden, Daniele E. Schiavazzi
2023	—	`conf`	Hemodynamics in Patients with Aortic Coarctation: A Comparison of in vivo 4D-Flow MRI and FSI Simulation. FIMH Priya J. Nair, Martin R. Pfaller, Seraina Anne Dual, Michael Loecher, Doff B. McElhinney, Daniel B. Ennis, Alison L. Marsden
2023	J	`jnl`	Learning Reduced-Order Models for Cardiovascular Simulations with Graph Neural Networks. CoRR Luca Pegolotti, Martin R. Pfaller, Natalia L. Rubio, Ke Ding, Rita Brugarolas Brufau, Eric Darve, Alison L. Marsden
2023	J	`jnl`	SDF4CHD: Generative Modeling of Cardiac Anatomies with Congenital Heart Defects. CoRR Fanwei Kong, Sascha Stocker, Perry S. Choi, Michael R. Ma, Daniel B. Ennis, Alison L. Marsden
2023	—	`conf`	Type and Shape Disentangled Generative Modeling for Congenital Heart Defects. STACOM@MICCAI Fanwei Kong, Alison L. Marsden
2022	—	`conf`	SimVascular Gateway for Education and Research. PEARC Justin Tran, Eroma Abeysinghe, John F. LaDisa Jr., Alison L. Marsden, Marlon E. Pierce
2022	J	`jnl`	svFSI: A Multiphysics Package for Integrated Cardiac Modeling. J. Open Source Softw. Chi Zhu, Vijay Vedula, David W. Parker, Nathan M. Wilson, Shawn C. Shadden, Alison L. Marsden
2022	J	`jnl`	svMorph: Interactive geometry-editing tools for virtual patient-specific vascular anatomies. CoRR Jonathan Pham, Sofia Wyetzner, Martin R. Pfaller, David W. Parker, Doug L. James, Alison L. Marsden
2021	J	`jnl`	Automated generation of 0D and 1D reduced-order models of patient-specific blood flow. CoRR Martin R. Pfaller, Jonathan Pham, Aekaansh Verma, Nathan M. Wilson, David W. Parker, Weiguang Yang, Alison L. Marsden
2021	J	`jnl`	Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease. PLoS Comput. Biol. Noelia Grande Gutiérrez, Mark S. Alber, Andrew M. Kahn, Jane C. Burns, Mathew Mathew, Brian W. McCrindle, Alison L. Marsden
2021	J	`jnl`	On the periodicity of cardiovascular fluid dynamics simulations. CoRR Martin R. Pfaller, Jonathan Pham, Nathan M. Wilson, David W. Parker, Alison L. Marsden
2021	—	`conf`	Quantitative Hemodynamics in Aortic Dissection: Comparing in Vitro MRI with FSI Simulation in a Compliant Model. FIMH Judith Zimmermann, Kathrin Bäumler, Michael Loecher, Tyler E. Cork, Fikunwa O. Kolawole, Kyle Gifford, Alison L. Marsden, Dominik Fleischmann, Daniel B. Ennis
2020	J	`jnl`	A note on the accuracy of the generalized-α scheme for the incompressible Navier-Stokes equations. CoRR Ju Liu, Ingrid S. Lan, Oguz Z. Tikenogullari, Alison L. Marsden
2020	J	`jnl`	Fluid-structure interaction modeling of blood flow in the pulmonary arteries using the unified continuum and variational multiscale formulation. CoRR Ju Liu, Weiguang Yang, Ingrid S. Lan, Alison L. Marsden
2020	J	`jnl`	Geometric Uncertainty in Patient-Specific Cardiovascular Modeling with Convolutional Dropout Networks. CoRR Gabriel D. Maher, Casey Fleeter, Daniele Schiavazzi, Alison L. Marsden
2020	J	`jnl`	Model order reduction of flow based on a modular geometrical approximation of blood vessels. CoRR Luca Pegolotti, Martin R. Pfaller, Alison L. Marsden, Simone Deparis
2019	J	`jnl`	A robust and efficient iterative method for hyper-elastodynamics with nested block preconditioning. J. Comput. Phys. Ju Liu, Alison L. Marsden
2019	J	`jnl`	Accelerating cardiovascular model building with convolutional neural networks. Medical Biol. Eng. Comput. Gabriel D. Maher, Nathan M. Wilson, Alison L. Marsden
2019	J	`jnl`	The nested block preconditioning technique for the incompressible Navier-Stokes equations with emphasis on hemodynamic simulations. CoRR Ju Liu, Weiguang Yang, Melody Dong, Alison L. Marsden
2018	J	`jnl`	Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput. Biol. Vijay Vedula, Juhyun Lee, Hao Xu, C.-C. Jay Kuo, Tzung K. Hsiai, Alison L. Marsden
2018	—	`conf`	Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. PEARC Nathan M. Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A. Christie, Gabriel D. Maher, Adam R. Updegrove, Marlon E. Pierce, Alison L. Marsden
2017	J	`jnl`	A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput. Biol. Vijay Vedula, Juhyun Lee, Hao Xu, C.-C. Jay Kuo, Tzung K. Hsiai, Alison L. Marsden
2017	C	`conf`	SimVascular as an instructional tool in the classroom. FIE Craig J. Goergen, Shawn C. Shadden, Alison L. Marsden
2016	—	`conf`	Dense Volume-to-Volume Vascular Boundary Detection. MICCAI (3) Jameson Tyler Merkow, Alison L. Marsden, David J. Kriegman, Zhuowen Tu
2016	J	`jnl`	Dense Volume-to-Volume Vascular Boundary Detection. CoRR Jameson Tyler Merkow, David J. Kriegman, Alison L. Marsden, Zhuowen Tu
2015	—	`conf`	Creating shape templates for patient specific biventricular modeling in congenital heart disease. EMBC Kathleen Gilbert, Genevieve Farrar, Brett R. Cowan, Avan Suinesiaputra, Christopher Occleshaw, Beau Pontre, James C. Perry, Sanjeet Hegde, Alison L. Marsden, Jeffrey H. Omens, Andrew D. McCulloch, Alistair A. Young
2015	—	`conf`	Structural Edge Detection for Cardiovascular Modeling. MICCAI (3) Jameson Tyler Merkow, Zhuowen Tu, David J. Kriegman, Alison L. Marsden
2013	J	`jnl`	A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations. J. Comput. Phys. Mahdi Esmaily Moghadam, Irene E. Vignon-Clementel, Richard Figliola, Alison L. Marsden
2013	—	`conf`	Low entropy data mapping for sparse iterative linear solvers. XSEDE Mahdi Esmaily-Moghadam, Yuri Bazilevs, Alison L. Marsden
2012	J	`jnl`	Identification of Hemodynamically Optimal Coronary Stent Designs Based on Vessel Caliber. IEEE Trans. Biomed. Eng. Timothy J. Gundert, Alison L. Marsden, Weiguang Yang, David S. Marks, John F. LaDisa Jr.
2012	—	`conf`	Immersive volume rendering of blood vessels. ERVR Gregory Long, Han Suk Kim, Alison L. Marsden, Yuri Bazilevs, Jürgen P. Schulze
2012	—	`conf`	Optimization of computationally expensive simulations with Gaussian processes and parameter uncertainty: Application to cardiovascular surgery. Allerton Conference Jing Xie, Peter I. Frazier, Sethuraman Sankaran, Alison L. Marsden, Saleh Elmohamed
2012	Misc	`conf`	Toward a Computational Steering Framework for Large-Scale Composite Structures Based on Continually and Dynamically Injected Sensor Data. ICCS Yuri Bazilevs, Alison L. Marsden, Francesco Lanza di Scalea, Amit Majumdar, Mahidhar Tatineni
2011	J	`jnl`	Towards inverse modeling of turbidity currents: The inverse lock-exchange problem. Comput. Geosci. Lutz Lesshafft, Eckart Meiburg, Ben Kneller, Alison L. Marsden
2010	J	`jnl`	A method for stochastic constrained optimization using derivative-free surrogate pattern search and collocation. J. Comput. Phys. Sethuraman Sankaran, Charles Audet, Alison L. Marsden
2008	J	`jnl`	Generation of Optimal Artificial Neural Networks Using a Pattern Search Algorithm: Application to Approximation of Chemical Systems. Neural Comput. Matthias Ihme, Alison L. Marsden, Heinz Pitsch