Alison A. Motsinger-Reif

27 papers A 2Journal 21Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Differences in brain spindle density during sleep between patients with and without type 2 diabetes.
Comput. Biol. Medicine
Deryck Yeung, Amlan Talukder, Min Shi, David M. Umbach, YuanYuan Li, Alison A. Motsinger-Reif, Janice J. Hwang, Zheng Fan, Leping Li
2025 J jnl
Efficient gene set analysis for DNA methylation addressing probe dependency and bias.
Bioinform.
Zongli Xu, Alison A. Motsinger-Reif, Liang Niu
2024 J jnl
Model-based evaluation of spatiotemporal data reduction methods with unknown ground truth through optimal visualization and interpretability metrics.
Briefings Bioinform.
Komlan Atitey, Alison A. Motsinger-Reif, Benedict Anchang
2024 J jnl
Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests.
Int. J. Medical Informatics
Lauren E. Chan, Elena Casiraghi, Justin T. Reese, Quaker E. Harmon, Kevin Schaper, Harshad Hegde, Giorgio Valentini, Charles Schmitt, Alison A. Motsinger-Reif, Janet E. Hall, Christopher J. Mungall, Peter N. Robinson, Melissa A. Haendel
2024 J jnl
Taxanorm: a novel taxa-specific normalization approach for microbiome data.
BMC Bioinform.
Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison A. Motsinger-Reif
2021 J jnl
Knockoff boosted tree for model-free variable selection.
Bioinform.
Tao Jiang, YuanYuan Li, Alison A. Motsinger-Reif
2021 J jnl
Prediction of synergistic drug combinations using PCA-initialized deep learning.
BioData Min.
Jun Ma, Alison A. Motsinger-Reif
2019 J jnl
Cheminformatics approach to exploring and modeling trait-associated metabolite profiles.
J. Cheminformatics
Jeremy R. Ash, Mélaine A. Kuenemann, Daniel M. Rotroff, Alison A. Motsinger-Reif, Denis Fourches
2019 J jnl
Identifying individual risk rare variants using protein structure guided local tests (POINT).
PLoS Comput. Biol.
Rachel Marceau West, Wenbin Lu, Daniel M. Rotroff, Mélaine A. Kuenemann, Sheng-Mao Chang, Michael C. Wu, Michael J. Wagner, John B. Buse, Alison A. Motsinger-Reif, Denis Fourches, Jung-Ying Tzeng
2018 J jnl
Gene set analysis methods: a systematic comparison.
BioData Min.
Ravi Mathur, Daniel M. Rotroff, Jun Ma, Ali Shojaie, Alison A. Motsinger-Reif
2015 J jnl
An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics.
BioData Min.
Andrew L. Beam, Alison A. Motsinger-Reif, Jon Doyle
2014 J jnl
An adaptive permutation approach for genome-wide association study: evaluation and recommendations for use.
BioData Min.
Ronglin Che, John R. Jack, Alison A. Motsinger-Reif, Chad C. Brown
2014 J jnl
Bayesian neural networks for detecting epistasis in genetic association studies.
BMC Bioinform.
Andrew L. Beam, Alison A. Motsinger-Reif, Jon Doyle
2014 J jnl
PGxClean: a quality control GUI for the Affymetrix DMET chip and other candidate gene studies with non-biallelic alleles.
BioData Min.
Daniel M. Rotroff, John R. Jack, Nathan Campbell, Scott Clark, Alison A. Motsinger-Reif
2013 J jnl
Risk score modeling of multiple gene to gene interactions using aggregated-multifactor dimensionality reduction.
BioData Min.
Hongying Dai, Richard J. Charnigo, Mara Becker, J. Steven Leeder, Alison A. Motsinger-Reif
2012 — conf
A comparison of GE optimized neural networks and decision trees.
GECCO (Companion)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, David M. Reif, Alison A. Motsinger-Reif
2012 J jnl
Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes.
BioData Min.
Hongying Dai, Madhusudan Bhandary, Mara Becker, J. Steven Leeder, Roger Gaedigk, Alison A. Motsinger-Reif
2012 — conf
Grammatical evolution support vector machines for predicting human genetic disease association.
GECCO (Companion)
Skylar W. Marvel, Alison A. Motsinger-Reif
2012 J jnl
Multivariate methods and software for association mapping in dose-response genome-wide association studies.
BioData Min.
Chad C. Brown, Tammy M. Havener, Marisa Wong Medina, Ronald M. Krauss, Howard L. McLeod, Alison A. Motsinger-Reif
2011 J jnl
An R package implementation of multifactor dimensionality reduction.
BioData Min.
Stacey J. Winham, Alison A. Motsinger-Reif
2011 — conf
Optimization of grammatical evolution decision trees.
GECCO (Companion)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, Nicholas E. Hardison, David M. Reif, Alison A. Motsinger-Reif
2011 A conf
The power of quantitative grammatical evolution neural networks to detect gene-gene interactions.
GECCO
Nicholas E. Hardison, Alison A. Motsinger-Reif
2010 J jnl
A comparison of internal validation techniques for multifactor dimensionality reduction.
BMC Bioinform.
Stacey J. Winham, Andrew J. Slater, Alison A. Motsinger-Reif
2010 — conf
Grammatical Evolution Decision Trees for Detecting Gene-Gene Interactions.
EvoBIO
Sushamna Deodhar, Alison A. Motsinger-Reif
2010 J jnl
Grammatical evolution decision trees for detecting gene-gene interactions.
BioData Min.
Alison A. Motsinger-Reif, Sushamna Deodhar, Stacey J. Winham, Nicholas E. Hardison
2008 A conf
A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance.
GECCO
Nicholas E. Hardison, Theresa J. Fanelli, Scott M. Dudek, David M. Reif, Marylyn D. Ritchie, Alison A. Motsinger-Reif
2008 J jnl
Neural networks for genetic epidemiology: past, present, and future.
BioData Min.
Alison A. Motsinger-Reif, Marylyn D. Ritchie