Alioune Ngom - RankMe

121 papers A* 1B 5C 13Misc 3Journal 41Unranked 52

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	LLM-IK: Solving Inverse Kinematics Using Large Language Models. IEEE Robotics Autom. Lett. Steven Rice, Sherif Saad, Ahmed Azab, Alioune Ngom
2025	—	`conf`	HeteroGraphNet: A Ligand-Receptor Informed, Heterophily-Adapted Graph Neural Network for Cell Type Prediction in scRNA-Seq Data. BIBM Mahshad Hashemi, Sharjeel Mustafa, Alioune Ngom, Luis Rueda
2025	—	`conf`	Heterophily-Aware Hypergraph Neural Networks for Cell Type Prediction Using Ligand-Receptor-Informed Single-Cell RNA-Seq Data. BIBM Mahshad Hashemi, Sharjeel Mustafa, Alioune Ngom, Luis Rueda
2025	J	`jnl`	Representation Learning with Adaptive Superpixel Coding. CoRR Mahmoud Khalil, Ahmad Khalil, Alioune Ngom
2025	J	`jnl`	ResNetVLLM - Multi-modal Vision LLM for the Video Understanding Task. CoRR Ahmad Khalil, Mahmoud Khalil, Alioune Ngom
2025	J	`jnl`	ResNetVLLM-2: Addressing ResNetVLLM's Multi-Modal Hallucinations. CoRR Ahmad Khalil, Mahmoud Khalil, Alioune Ngom
2024	J	`jnl`	Can large language models understand molecules? BMC Bioinform. Seyedeh Shaghayegh Sadeghi, Alan Bui, Ali Forooghi, Jianguo Lu, Alioune Ngom
2024	J	`jnl`	Comparative Analysis of LLaMA and ChatGPT Embeddings for Molecule Embedding. CoRR Seyedeh Shaghayegh Sadeghi, Alan Bui, Ali Forooghi, Jianguo Lu, Alioune Ngom
2024	—	`conf`	Toward Forensic-Friendly AI: Integrating Blockchain with Federated Learning to Enhance AI Trustworthiness. ICDF2C (1) Safiia Mohammed, Alioune Ngom
2023	J	`jnl`	A Comprehensive Study of Vision Transformers in Image Classification Tasks. CoRR Mahmoud Khalil, Ahmad Khalil, Alioune Ngom
2022	J	`jnl`	A network-based drug repurposing method via non-negative matrix factorization. Bioinform. Seyedeh Shaghayegh Sadeghi, Jianguo Lu, Alioune Ngom
2022	J	`jnl`	Computationally repurposing drugs for breast cancer subtypes using a network-based approach. BMC Bioinform. Forough Firoozbakht, Iman Rezaeian, Luis Rueda, Alioune Ngom
2022	C	`conf`	DDIPred: Graph Convolutional Network-Based Drug-drug Interactions Prediction Using Drug Chemical Structure Embedding. CIBCB Seyedeh Shaghayegh Sadeghi, Alioune Ngom
2022	C	`conf`	DeePSLiM: A Deep Learning Approach to Identify Predictive Short-linear Motifs for Protein Sequence Classification. CIBCB Alexandru Filip, Seyedeh Shaghayegh Sadeghi, Alioune Ngom, Luis Rueda
2020	—	`conf`	A Data Integration Approach for Detecting Biomarkers of Breast Cancer Survivability. IWBBIO Huy Quang Pham, Luis Rueda, Alioune Ngom
2020	J	`jnl`	A novel approach to identify subtype-specific network biomarkers of breast cancer survivability. Netw. Model. Anal. Health Informatics Bioinform. Sheikh Jubair, Abedalrhman Alkhateeb, Ashraf Abou Tabl, Luis Rueda, Alioune Ngom
2020	—	`conf`	Blood Cell Types Classification Using CNN. IWBBIO Ishpreet Singh, Narinder Pal Singh, Harnoor Singh, Saharsh Bawankar, Alioune Ngom
2020	—	`conf`	Cancer Detection Based on Image Classification by Using Convolution Neural Network. IWBBIO Mohammad Anas Shah, Abdala Nour, Alioune Ngom, Luis Rueda
2019	—	`conf`	A Network-based Machine Learning Approach for Identifying Biomarkers of Breast Cancer Survivability. BCB Huy Quang Pham, Jurko Guba, Mousa Gawanmeh, Lisa A. Porter, Alioune Ngom
2018	J	`jnl`	A review on machine learning principles for multi-view biological data integration. Briefings Bioinform. Yifeng Li, Fang-Xiang Wu, Alioune Ngom
2018	C	`conf`	Drug target interaction predictions using PU- Leaming under different experimental setting for four formulations namely known drug target pair prediction, drug prediction, target prediction and unknown drug target pair prediction. CIBCB Hetal Rahul Rajpura, Alioune Ngom
2018	—	`conf`	Identification of the Treatment Survivability Gene Biomarkers of Breast Cancer Patients via a Tree-Based Approach. IWBBIO (1) Ashraf Abou Tabl, Abedalrhman Alkhateeb, Luis Rueda, Waguih H. ElMaraghy, Alioune Ngom
2018	B	`conf`	Identifying suutype specific network-Uiomarkers of breast cancer survivauility. IJCNN Sheikh Jubair, Luis Rueda, Alioune Ngom
2018	J	`jnl`	The predictive performance of short-linear motif features in the prediction of calmodulin-binding proteins. BMC Bioinform. Yixun Li, Mina Maleki, Nicholas J. Carruthers, Paul M. Stemmer, Alioune Ngom, Luis Rueda
2017	J	`jnl`	An Integrative Approach for Identifying Network Biomarkers of Breast Cancer Subtypes Using Genomic, Interactomic, and Transcriptomic Data. J. Comput. Biol. Forough Firoozbakht, Iman Rezaeian, Michele D'agnillo, Lisa A. Porter, Luis Rueda, Alioune Ngom
2017	—	`conf`	Machine Learning Model for Identifying Gene Biomarkers for Breast Cancer Treatment Survival. BCB Ashraf Abou Tabl, Abed Alkhateeb, Waguih H. ElMaraghy, Alioune Ngom
2017	—	`conf`	Outlier Genes as Biomarkers of Breast Cancer Survivability in Time-Series Data. BCB Naveen Mangalakumar, Abed Alkhateeb, Huy Quang Pham, Luis Rueda, Alioune Ngom
2017	—	`conf`	Predicting Breast Cancer Outcome under Different Treatments by Feature Selection Approaches. BCB Huy Quang Pham, Luis Rueda, Alioune Ngom
2017	—	`conf`	Prediction of Calmodulin-Binding Proteins Using Short-Linear Motifs. IWBBIO (2) Yixun Li, Mina Maleki, Nicholas J. Carruthers, Luis Rueda, Paul M. Stemmer, Alioune Ngom
2016	—	`conf`	A new feature selection approach for optimizing prediction models, applied to breast cancer subtype classification. BIBM Huy Quang Pham, Alioune Ngom, Luis Rueda
2016	—	`conf`	PAFS - An efficient method for classifier-specific feature selection. SSCI Huy Quang Pham, Alioune Ngom, Luis Rueda
2016	J	`jnl`	Predicting Outcomes of Hormone and Chemotherapy in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) Study by Biochemically-inspired Machine Learning. F1000Research Iman Rezaeian, Eliseos J. Mucaki, Katherina Baranova, Huy Quang Pham, Dimo Angelov, Alioune Ngom, Luis Rueda, Peter K. Rogan
2016	J	`jnl`	The Max-Min High-Order Dynamic Bayesian Network for Learning Gene Regulatory Networks with Time-Delayed Regulations. IEEE ACM Trans. Comput. Biol. Bioinform. Yifeng Li, Haifen Chen, Jie Zheng, Alioune Ngom
2015	—	`conf`	A new compact set of biomarkers for distinguishing among ten breast cancer subtypes. BIBM Forough Firoozbakht, Iman Rezaeian, Alioune Ngom, Luis Rueda
2015	C	`conf`	A novel approach for finding informative genes in ten subtypes of breast cancer. CIBCB Forough Firoozbakht, Iman Rezaeian, Alioune Ngom, Luis Rueda, Lisa A. Porter
2015	—	`conf`	Data integration in machine learning. BIBM Yifeng Li, Alioune Ngom
2015	J	`jnl`	Pattern classification using a new border identification paradigm: The nearest border technique. Neurocomputing Yifeng Li, B. John Oommen, Alioune Ngom, Luis Rueda
2015	C	`conf`	Prediction of high-throughput protein-protein interactions based on protein sequence information. CIBCB Yixun Li, Behzad Rezaei, Alioune Ngom, Luis Rueda
2015	J	`jnl`	The relative vertex clustering value - a new criterion for the fast discovery of functional modules in protein interaction networks. BMC Bioinform. Zina M. Ibrahim, Alioune Ngom
2014	B	`conf`	A decomposition method for large-scale sparse coding in representation learning. IJCNN Yifeng Li, Richard J. Caron, Alioune Ngom
2014	J	`jnl`	Guest Editorial: Pattern Recognition in Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. Elena Marchiori, Alioune Ngom, Raj Acharya
2014	—	`ed.`	Pattern Recognition in Bioinformatics - 9th IAPR International Conference, PRIB 2014, Stockholm, Sweden, August 21-23, 2014. Proceedings PRIB Matteo Comin, Lukas Käll, Elena Marchiori, Alioune Ngom, Jagath C. Rajapakse
2014	J	`jnl`	Pattern recognition in bioinformatics. Neurocomputing Xing-Ming Zhao, Alioune Ngom, Jin-Kao Hao
2014	J	`jnl`	Versatile sparse matrix factorization: Theory and applications. Neurocomputing Yifeng Li, Alioune Ngom
2013	—	`conf`	A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks. PRIB Mohammad Shamsur Rahman, Alioune Ngom
2013	—	`conf`	A New Paradigm for Pattern Classification: Nearest Border Techniques. Australasian Conference on Artificial Intelligence Yifeng Li, B. John Oommen, Alioune Ngom, Luis Rueda
2013	J	`jnl`	Classification approach based on non-negative least squares. Neurocomputing Yifeng Li, Alioune Ngom
2013	—	`conf`	FAC-PIN: Fast agglomerative clustering method for functional modules and protein complex identification in PINs. ICCABS Mohammad Shamsur Rahman, Alioune Ngom
2013	—	`conf`	Identifying Informative Genes for Prediction of Breast Cancer Subtypes. PRIB Iman Rezaeian, Yifeng Li, Martin Crozier, Eran Andrechek, Alioune Ngom, Luis Rueda, Lisa A. Porter
2013	J	`jnl`	Nonnegative Least-Squares Methods for the Classification of High-Dimensional Biological Data. IEEE ACM Trans. Comput. Biol. Bioinform. Yifeng Li, Alioune Ngom
2013	—	`ed.`	Pattern Recognition in Bioinformatics - 8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings PRIB Alioune Ngom, Enrico Formenti, Jin-Kao Hao, Xing-Ming Zhao, Twan van Laarhoven
2013	—	`conf`	Prediction of Biological Protein-protein Interaction Types Using Short-Linear Motifs. BCB Manish Pandit, Luis Rueda, Alioune Ngom
2013	J	`jnl`	Sparse representation approaches for the classification of high-dimensional biological data. BMC Syst. Biol. Yifeng Li, Alioune Ngom
2013	C	`conf`	The max-min high-order dynamic Bayesian network learning for identifying gene regulatory networks from time-series microarray data. CIBCB Yifeng Li, Alioune Ngom
2013	J	`jnl`	The non-negative matrix factorization toolbox for biological data mining. Source Code Biol. Medicine Yifeng Li, Alioune Ngom
2013	—	`conf`	Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis. PRIB Yifeng Li, Alioune Ngom
2012	—	`conf`	A Framework of Gene Subset Selection Using Multiobjective Evolutionary Algorithm. PRIB Yifeng Li, Alioune Ngom, Luis Rueda
2012	C	`conf`	A new Kernel non-negative matrix factorization and its application in microarray data analysis. CIBCB Yifeng Li, Alioune Ngom
2012	—	`conf`	Diagnose the Premalignant Pancreatic Cancer Using High Dimensional Linear Machine. PRIB Yifeng Li, Alioune Ngom
2012	A*	`conf`	Fast Kernel Sparse Representation Approaches for Classification. ICDM Yifeng Li, Alioune Ngom
2012	—	`conf`	Fast sparse representation approaches for the classification of high-dimensional biological data. BIBM Yifeng Li, Alioune Ngom
2012	—	`conf`	Supervised Dictionary Learning via Non-negative Matrix Factorization for Classification. ICMLA (1) Yifeng Li, Alioune Ngom
2011	C	`conf`	A Novel Recursive Feature Subset Selection Algorithm. BIBE Amirali Jafarian, Alioune Ngom, Luis Rueda
2011	—	`conf`	A new gene subset selection approach based on linearly separating gene pairs. ICCABS Amirali Jafarian, Alioune Ngom
2011	J	`jnl`	Image segmentation of biofilm structures using optimal multi-level thresholding. Int. J. Data Min. Bioinform. Darío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo
2011	—	`conf`	New Gene Subset Selection Approaches Based on Linear Separating Genes and Gene-Pairs. PRIB Amirali Jafarian, Alioune Ngom, Luis Rueda
2011	J	`jnl`	Using Qualitative Probability in Reverse-Engineering Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik
2010	Misc	`conf`	A Surprise-Based Qualitative Probability Calculus II. FLAIRS Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2010	—	`conf`	A dynamic qualitative probabilistic network approach for extracting gene regulatory network motifs. BIBM Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik
2010	B	`conf`	Alignment versus variation methods for clustering microarray time-series data. IEEE Congress on Evolutionary Computation Numanul Subhani, Yifeng Li, Alioune Ngom, Luis Rueda
2010	—	`conf`	Alignment-based versus variation-based transformation methods for clustering microarray time-series data. BCB Yifeng Li, Numanul Subhani, Alioune Ngom, Luis Rueda
2010	—	`conf`	Classification of Clinical Gene-Sample-Time Microarray Expression Data via Tensor Decomposition Methods. CIBB Yifeng Li, Alioune Ngom
2010	J	`jnl`	Computational Intelligence in Bioinformatics. Neurocomputing Madhu Chetty, Alioune Ngom, Elena Marchiori
2010	C	`conf`	Missing value imputation methods for gene-sample-time microarray data analysis. CIBCB Yifeng Li, Alioune Ngom, Luis Rueda
2010	J	`jnl`	Multiple gene expression profile alignment for microarray time-series data clustering. Bioinform. Numanul Subhani, Luis Rueda, Alioune Ngom, Conrad J. Burden
2010	C	`conf`	New approaches to clustering microarray time-series data using multiple expression profile alignment. CIBCB Numanul Subhani, Luis Rueda, Alioune Ngom, Conrad J. Burden
2010	—	`conf`	Non-negative matrix and tensor factorization based classification of clinical microarray gene expression data. BIBM Yifeng Li, Alioune Ngom
2010	J	`jnl`	Optimal decoding and minimal length for the non-unique oligonucleotide probe selection problem. Neurocomputing Laleh Soltan Ghoraie, Robin Gras, Lili Wang, Alioune Ngom
2010	J	`jnl`	Optimized Hybrid Resource Allocation in Wireless Cellular Networks with and without Channel Reassignment. J. Comput. Networks Commun. Xin Wu, Arunita Jaekel, Ataul Bari, Alioune Ngom
2010	J	`jnl`	Selection based heuristics for the non-unique oligonucleotide probe selection problem in microarray design. Pattern Recognit. Lett. Alioune Ngom, Luis Rueda, Lili Wang, Robin Gras
2009	Misc	`conf`	A Surprise-based Qualitative Calculus. FLAIRS Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2009	—	`conf`	Bayesian Optimization Algorithm for the Non-unique Oligonucleotide Probe Selection Problem. PRIB Laleh Soltan Ghoraie, Robin Gras, Lili Wang, Alioune Ngom
2009	—	`conf`	Biofilm Image Segmentation Using Optimal Multi-level Thresholding. BIBM Darío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo
2009	—	`conf`	Efficient Optimal Multi-level Thresholding for Biofilm Image Segmentation. PRIB Darío Rojas, Luis Rueda, Homero Urrutia, Alioune Ngom
2009	—	`conf`	Microarray Time-Series Data Clustering via Multiple Alignment of Gene Expression Profiles. PRIB Numanul Subhani, Alioune Ngom, Luis Rueda, Conrad J. Burden
2009	—	`conf`	Optimized Hybrid Resource Allocation in Wireless Cellular Networks with and without Channel Reassignment. ITNG Xin Wu, Arunita Jaekel, Ataul Bari, Alioune Ngom
2009	—	`conf`	Qualitative Motif Detection in Gene Regulatory Networks. BIBM Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2009	C	`conf`	Surprise-Based Qualitative Probabilistic Networks. ECSQARU Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2008	J	`jnl`	An Evolutionary Approach to the Non-unique Oligonucleotide Probe Selection Problem. Trans. Comp. Sys. Biology Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda
2008	J	`jnl`	Clustering Time-Series Gene Expression Data with Unequal Time Intervals. Trans. Comp. Sys. Biology Luis Rueda, Ataul Bari, Alioune Ngom
2008	C	`conf`	Evolution strategy with greedy probe selection heuristics for the non-unique oligonucleotide probe selection problem. CIBCB Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda
2008	B	`conf`	Non-unique oligonucleotide microarray probe selection method based on genetic algorithms. IEEE Congress on Evolutionary Computation Lili Wang, Alioune Ngom, Robin Gras
2008	—	`ed.`	Pattern Recognition in Bioinformatics, Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings PRIB Madhu Chetty, Alioune Ngom, Shandar Ahmad
2008	—	`conf`	Qualitative Hidden Markov Models for Classifying Gene Expression Data. SGAI Conf. Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2008	—	`conf`	Sequential Forward Selection Approach to the Non-unique Oligonucleotide Probe Selection Problem. PRIB Lili Wang, Alioune Ngom, Luis Rueda
2008	—	`ed.`	Transactions on Computational Systems Biology X Trans. Computational Systems Biology Corrado Priami, Falko Dressler, Özgür B. Akan, Alioune Ngom
2007	—	`conf`	A Model-Based Approach to the Non-Unique Oligonucleotide Probe Selection Problem. BIONETICS Lili Wang, Alioune Ngom
2007	C	`conf`	A Qualitative Hidden Markov Model for Spatio-temporal Reasoning. ECSQARU Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
2007	J	`jnl`	On Finding the Best Parameters of Fuzzy k-Means for Clustering Microarray Data. J. Multiple Valued Log. Soft Comput. Wei Yang, Luis Rueda, Alioune Ngom
2006	J	`jnl`	Evolutionary Strategy for Learning Multiple-Valued Logic Functions. J. Multiple Valued Log. Soft Comput. Alioune Ngom, Dan A. Simovici, Ivan Stojmenovic
2006	J	`jnl`	Parallel evolution strategy on grids for the protein threading problem. J. Parallel Distributed Comput. Alioune Ngom
2006	B	`conf`	Protein Threading using Parallel Evolution Strategy. IEEE Congress on Evolutionary Computation Rafiqul Islam, Alioune Ngom
2005	J	`jnl`	A hybrid channel assignment approach using an efficient evolutionary strategy in wireless mobile networks. IEEE Trans. Veh. Technol. Geetali Vidyarthi, Alioune Ngom, Ivan Stojmenovic
2005	—	`conf`	A simulated annealing approach to find the optimal parameters for fuzzy clustering microarray data. SCCC Wei Yang, Luis Rueda, Alioune Ngom
2005	—	`conf`	Fast Protein Superfamily Classification Using Principal Component Null Space Analysis. Canadian AI Leon French, Alioune Ngom, Luis Rueda
2005	—	`conf`	Genetic Algorithm Based Scheduler for Computational Grids. HPCS Mona Aggarwal, Robert D. Kent, Alioune Ngom
2005	—	`ch.`	On the Computing Capacity of Multiple-Valued Multiple-Threshold Perceptrons. Handbook of Bioinspired Algorithms and Applications Alioune Ngom, Jovisa D. Zunic, Ivan Stojmenovic
2005	—	`conf`	Parallel evolution strategy for protein threading. SCCC Rafiqul Islam, Alioune Ngom
2005	—	`ch.`	Synthesis of Multiple-Valued Circuits by Neural Networks. Handbook of Bioinspired Algorithms and Applications Alioune Ngom, Ivan Stojmenovic
2004	Misc	`conf`	An Empirical Evaluation of the Classification Error of Two Thresholding Methods for Fisher's Classifier. IC-AI Luis Rueda, Alioune Ngom
2004	—	`conf`	Evolutionary Strategy for Learning Multiple-Valued Logic Functions. ISMVL Alioune Ngom, Dan A. Simovici, Ivan Stojmenovic
2003	J	`jnl`	On the number of multilinear partitions and the computing capacity of multiple-valued multiple-threshold perceptrons. IEEE Trans. Neural Networks Alioune Ngom, Ivan Stojmenovic, Jovisa D. Zunic
2001	J	`jnl`	STRIP - a strip-based neural-network growth algorithm for learning multiple-valued functions. IEEE Trans. Neural Networks Alioune Ngom, Ivan Stojmenovic, Veljko Milutinovic
2001	J	`jnl`	The Computing Capacity of Three-Input Multiple-Valued One-Threshold Perceptrons. Neural Process. Lett. Alioune Ngom, Ivan Stojmenovic, Ratko Tosic
2000	J	`jnl`	Learning with Permutably Homogeneous Multiple-Valued Multiple-Threshold Perceptrons. Neural Process. Lett. Alioune Ngom, Corina Reischer, Dan A. Simovici, Ivan Stojmenovic
2000	—	`conf`	The Computing Capacity of Three-Input Multiple-Valued One-Threshold Perceptrons. ISMVL Alioune Ngom, Ivan Stojmenovic, Ratko Tosic
1999	—	`conf`	On the Number of Multilinear Partitions and the Computing Capacity of Multiple-Valued Multiple-Threshold Perceptrons. ISMVL Alioune Ngom, Ivan Stojmenovic, Jovisa D. Zunic
1998	—	`conf`	Learning with Permutably Homogenous Multiple-Valued Multiple-Threshold Perceptrons. ISMVL Alioune Ngom, Corina Reischer, Dan A. Simovici, Ivan Stojmenovic
1998	—	`conf`	Minimization of Multivalued Multithreshold Perceptrons using Genetic Algorithms. ISMVL Alioune Ngom, Ivan Stojmenovic, Zoran Obradovic
1997	—	`conf`	Completeness Criteria in Set-Valued Logic Under Compositions with Union and Intersection. ISMVL Alioune Ngom, Corina Reischer, Dan A. Simovici, Ivan Stojmenovic
1995	—	`conf`	Classification of Functions and Enumeration of Bases of Set Logic under Boolean Compositions. ISMVL Alioune Ngom, Corina Reischer, Ivan Stojmenovic