Ali Mortazavi

32 papers A* 2A 1Journal 28Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Autonomous battery research: Principles of heuristic operando experimentation.
CoRR
Emily Lu, Gabriel Perez, Peter Baker, Daniel Irving, Santosh Kumar, Veronica Celorrio, Sylvia Britto, Thomas F. Headen, Miguel Gomez-Gonzalez, Connor Wright, Calum Green, Robert Scott Young, Oleg Kirichek, Ali Mortazavi, Sarah Day, Isabel Antony, Zoe Wright, Thomas Wood, Tim Snow, Jeyan Thiyagalingam, Paul Quinn, Martin Owen Jones, William David, James Le Houx
2026 J jnl
Dogme: a nextflow pipeline for reprocessing nanopore RNA and DNA modifications.
Bioinform.
Elnaz Abdollahzadeh, Ali Mortazavi
2025 J jnl
A novel binomial-based fuzzy type-2 approach for topology and size optimization of skeletal structures.
Adv. Eng. Softw.
Ali Mortazavi
2025 J jnl
Long-read sequencing transcriptome quantification with lr-kallisto.
PLoS Comput. Biol.
Rebekah K. Loving, Delaney K. Sullivan, Fairlie Reese, Elisabeth Rebboah, Jasmine Sakr, Narges Rezaie, Heidi Y. Liang, Ghassan Filimban, Shimako Kawauchi, A. Sina Booeshaghi, Páll Melsted, Conrad Oakes, Diane Trout, Brian A. Williams, Grant R. Macgregor, Barbara J. Wold, Ali Mortazavi, Lior Pachter
2025 A* conf
No-Regret Incentive-Compatible Online Learning under Exact Truthfulness with Non-Myopic Experts.
EC
Junpei Komiyama, Nishant A. Mehta, Ali Mortazavi
2025 J jnl
No-regret incentive-compatible online learning under exact truthfulness with non-myopic experts.
CoRR
Junpei Komiyama, Nishant A. Mehta, Ali Mortazavi
2024 J jnl
A fuzzy reinforced Jaya algorithm for solving mathematical and structural optimization problems.
Soft Comput.
Ali Mortazavi
2024 J jnl
A novel type-2 decision mechanism for dynamic parameter adaptation: theory and application in mathematical and structural problems.
Neural Comput. Appl.
Ali Mortazavi
2024 J jnl
On the price of exact truthfulness in incentive-compatible online learning with bandit feedback: A regret lower bound for WSU-UX.
CoRR
Ali Mortazavi, Junhao Lin, Nishant A. Mehta
2024 A conf
On the price of exact truthfulness in incentive-compatible online learning with bandit feedback: a regret lower bound for WSU-UX.
AISTATS
Ali Mortazavi, Junhao Lin, Nishant A. Mehta
2024 J jnl
Simultaneous optimization of capacity and topology of seismic isolation systems in multi-story buildings using a fuzzy reinforced differential evolution method.
Adv. Eng. Softw.
Ali Mortazavi, Elif Cagda Kandemir
2023 J jnl
Novel Wearable HD-EMG Sensor With Shift-Robust Gesture Recognition Using Deep Learning.
IEEE Trans. Biomed. Circuits Syst.
Félix Chamberland, Étienne Buteau, Simon Tam, Evan Campbell, Ali Mortazavi, Erik J. Scheme, Paul Fortier, Mounir Boukadoum, Alexandre Campeau-Lecours, Benoit Gosselin
2023 J jnl
PyWGCNA: a Python package for weighted gene co-expression network analysis.
Bioinform.
Narges Rezaie, Farilie Reese, Ali Mortazavi
2022 J jnl
Interactive fuzzy Bayesian search algorithm: A new reinforced swarm intelligence tested on engineering and mathematical optimization problems.
Expert Syst. Appl.
Ali Mortazavi
2022 J jnl
Optimization of Seismic Base Isolation System Using a Fuzzy Reinforced Swarm Intelligence.
Adv. Eng. Softw.
Elif Cagda Kandemir, Ali Mortazavi
2021 J jnl
Bayesian Interactive Search Algorithm: A New Probabilistic Swarm Intelligence Tested on Mathematical and Structural Optimization Problems.
Adv. Eng. Softw.
Ali Mortazavi
2021 J jnl
Best-Case Lower Bounds in Online Learning.
CoRR
Cristóbal Guzmán, Nishant A. Mehta, Ali Mortazavi
2021 A* conf
Best-case lower bounds in online learning.
NeurIPS
Cristóbal Guzmán, Nishant A. Mehta, Ali Mortazavi
2021 J jnl
Differential evolution method integrated with a fuzzy decision-making mechanism and Virtual Mutant agent: Theory and application.
Appl. Soft Comput.
Ali Mortazavi, Mahsa Moloodpoor
2021 J jnl
Enhanced Butterfly Optimization Algorithm with a New fuzzy Regulator Strategy and Virtual Butterfly Concept.
Knowl. Based Syst.
Ali Mortazavi, Mahsa Moloodpoor
2021 J jnl
Swan: a library for the analysis and visualization of long-read transcriptomes.
Bioinform.
Fairlie Reese, Ali Mortazavi
2020 J jnl
A new fuzzy strategy for size and topology optimization of truss structures.
Appl. Soft Comput.
Ali Mortazavi
2020 J jnl
Large-scale structural optimization using a fuzzy reinforced swarm intelligence algorithm.
Adv. Eng. Softw.
Ali Mortazavi
2019 J jnl
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.
PLoS Comput. Biol.
Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi
2019 J jnl
Interactive fuzzy search algorithm: A new self-adaptive hybrid optimization algorithm.
Eng. Appl. Artif. Intell.
Ali Mortazavi
2019 — conf
Progressive Clustering and Characterization of Increasingly Higher Dimensional Datasets with Living Self-organizing Maps.
WSOM+
Camden Jansen, Ali Mortazavi
2019 J jnl
Solution of structural and mathematical optimization problems using a new hybrid swarm intelligence optimization algorithm.
Adv. Eng. Softw.
Ali Mortazavi, Vedat Togan, Mahsa Moloodpoor
2019 J jnl
TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts.
Bioinform.
Dana Wyman, Ali Mortazavi
2018 J jnl
Interactive search algorithm: A new hybrid metaheuristic optimization algorithm.
Eng. Appl. Artif. Intell.
Ali Mortazavi, Vedat Togan, Ayhan Nuhoglu
2017 J jnl
Sizing and layout design of truss structures under dynamic and static constraints with an integrated particle swarm optimization algorithm.
Appl. Soft Comput.
Ali Mortazavi, Vedat Togan
2014 J jnl
The common ground of genomics and systems biology.
BMC Syst. Biol.
Ana Conesa, Ali Mortazavi
2006 J jnl
Mining gene expression data by interpreting principal components.
BMC Bioinform.
Joseph C. Roden, Brandon W. King, Diane Trout, Ali Mortazavi, Barbara J. Wold, Christopher E. Hart