Ali Madani - RankMe

20 papers A* 2B 1Journal 14Unranked 3

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Conditional Enzyme Generation Using Protein Language Models with Adapters. CoRR Jason Yang, Aadyot Bhatnagar, Jeffrey A. Ruffolo, Ali Madani
2024	J	`jnl`	Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion. CoRR Alex Morehead, Jeffrey A. Ruffolo, Aadyot Bhatnagar, Ali Madani
2022	J	`jnl`	ProGen2: Exploring the Boundaries of Protein Language Models. CoRR Erik Nijkamp, Jeffrey A. Ruffolo, Eli N. Weinstein, Nikhil Naik, Ali Madani
2021	A*	`conf`	BERTology Meets Biology: Interpreting Attention in Protein Language Models. ICLR Jesse Vig, Ali Madani, Lav R. Varshney, Caiming Xiong, Richard Socher, Nazneen Fatema Rajani
2021	A*	`conf`	Deep Extrapolation for Attribute-Enhanced Generation. NeurIPS Alvin Chan, Ali Madani, Ben Krause, Nikhil Naik
2021	J	`jnl`	Deep Extrapolation for Attribute-Enhanced Generation. CoRR Alvin Chan, Ali Madani, Ben Krause, Nikhil Naik
2021	J	`jnl`	Deep learning-enabled medical computer vision. npj Digit. Medicine Andre Esteva, Katherine Chou, Serena Yeung, Nikhil Naik, Ali Madani, Ali Mottaghi, Yun Liu, Eric J. Topol, Jeff Dean, Richard Socher
2021	—	`conf`	FLIP: Benchmark tasks in fitness landscape inference for proteins. NeurIPS Datasets and Benchmarks Christian Dallago, Jody Mou, Kadina E. Johnston, Bruce J. Wittmann, Nicholas Bhattacharya, Samuel Goldman, Ali Madani, Kevin K. Yang
2020	J	`jnl`	BERTology Meets Biology: Interpreting Attention in Protein Language Models. CoRR Jesse Vig, Ali Madani, Lav R. Varshney, Caiming Xiong, Richard Socher, Nazneen Fatema Rajani
2020	J	`jnl`	ProGen: Language Modeling for Protein Generation. CoRR Ali Madani, Bryan McCann, Nikhil Naik, Nitish Shirish Keskar, Namrata Anand, Raphael R. Eguchi, Po-Ssu Huang, Richard Socher
2020	J	`jnl`	Profile Prediction: An Alignment-Based Pre-Training Task for Protein Sequence Models. CoRR Pascal Sturmfels, Jesse Vig, Ali Madani, Nazneen Fatema Rajani
2019	J	`jnl`	ProDyn0: Inferring calponin homology domain stretching behavior using graph neural networks. CoRR Ali Madani, Cyna Shirazinejad, Jia Rui Ong, Hengameh Shams, Mohammad R. K. Mofrad
2018	—	`conf`	Bimodal Network Architectures for Automatic Generation of Image Annotation from Text. MICCAI (1) Mehdi Moradi, Ali Madani, Yaniv Gur, Yufan Guo, Tanveer F. Syeda-Mahmood
2018	J	`jnl`	Bimodal network architectures for automatic generation of image annotation from text. CoRR Mehdi Moradi, Ali Madani, Yaniv Gur, Yufan Guo, Tanveer F. Syeda-Mahmood
2018	B	`conf`	Chest x-ray generation and data augmentation for cardiovascular abnormality classification. Image Processing Ali Madani, Mehdi Moradi, Alexandros Karargyris, Tanveer F. Syeda-Mahmood
2018	J	`jnl`	Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease. npj Digit. Medicine Ali Madani, Jia Rui Ong, Anshul Tibrewal, Mohammad R. K. Mofrad
2018	J	`jnl`	Fast and accurate view classification of echocardiograms using deep learning. npj Digit. Medicine Ali Madani, Ramy Arnaout, Mohammad R. K. Mofrad, Rima Arnaout
2018	—	`conf`	Semi-supervised learning with generative adversarial networks for chest X-ray classification with ability of data domain adaptation. ISBI Ali Madani, Mehdi Moradi, Alexandros Karargyris, Tanveer F. Syeda-Mahmood
2017	J	`jnl`	Fast and accurate classification of echocardiograms using deep learning. CoRR Ali Madani, Ramy Arnaout, Mohammad R. K. Mofrad, Rima Arnaout
2016	J	`jnl`	Modeling the impacts of tillage practices on water table depth, drain outflow and nitrogen losses using DRAINMOD. Comput. Electron. Agric. Golmar Golmohammadi, Ramesh P. Rudra, Shiv O. Prasher, Ali Madani, Pradeep K. Goel, Kourosh Mohammadi