Ali Gooya - RankMe

68 papers B 2Journal 37Unranked 25

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	UDF-GMA: Uncertainty Disentanglement and Fusion for General Movement Assessment. IEEE J. Biomed. Health Informatics Zeqi Luo, Ali Gooya, Edmond S. L. Ho
2025	J	`jnl`	An End-to-End Deep Learning Generative Framework for Refinable Shape Matching and Generation. IEEE Trans. Medical Imaging Soodeh Kalaie, Andy Bulpitt, Alejandro F. Frangi, Ali Gooya
2025	J	`jnl`	CardioMorphNet: Cardiac Motion Prediction Using a Shape-Guided Bayesian Recurrent Deep Network. CoRR Reza Akbari Movahed, Abuzar Rezaee, Arezoo Zakeri, Colin Berry, Edmond S. L. Ho, Ali Gooya
2025	J	`jnl`	FractMorph: A Fractional Fourier-Based Multi-Domain Transformer for Deformable Image Registration. CoRR Shayan Kebriti, Shahabedin Nabavi, Ali Gooya
2025	J	`jnl`	SegMorph: Concurrent Motion Estimation and Segmentation for Cardiac MRI Sequences. IEEE Trans. Medical Imaging Ning Bi, Arezoo Zakeri, Yan Xia, Nina Cheng, Alejandro F. Frangi, Ali Gooya
2025	J	`jnl`	UDF-GMA: Uncertainty Disentanglement and Fusion for General Movement Assessment. CoRR Zeqi Luo, Ali Gooya, Edmond S. L. Ho
2024	J	`jnl`	4D-Precise: Learning-based 3D motion estimation and high temporal resolution 4DCT reconstruction from treatment 2D+t X-ray projections. Comput. Methods Programs Biomed. Arezoo Zakeri, Alireza Hokmabadi, Michael G. Nix, Ali Gooya, Isuru Wijesinghe, Zeike A. Taylor
2024	J	`jnl`	An End-to-End Deep Learning Generative Framework for Refinable Shape Matching and Generation. CoRR Soodeh Kalaie, Andy Bulpitt, Alejandro F. Frangi, Ali Gooya
2024	J	`jnl`	Deep-Motion-Net: GNN-based volumetric organ shape reconstruction from single-view 2D projections. CoRR Isuru Wijesinghe, Michael G. Nix, Arezoo Zakeri, Alireza Hokmabadi, Bashar Al-Qaisieh, Ali Gooya, Zeike A. Taylor
2024	J	`jnl`	Immune subtyping of melanoma whole slide images using multiple instance learning. Medical Image Anal. Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya, Derek R. Magee
2023	—	`conf`	A Geometric Deep Learning Framework for Generation of Virtual Left Ventricles as Graphs. MIDL Soodeh Kalaie, Andrew J. Bulpitt, Alejandro F. Frangi, Ali Gooya
2023	—	`conf`	Deep learning with visual explanation for radiotherapy-induced toxicity prediction. Computer-Aided Diagnosis Behnaz Elhaminia, Alexandra Gilbert, Alejandro F. Frangi, Andrew F. Scarsbrook, John Lilley, Ane Appelt, Ali Gooya
2023	J	`jnl`	DragNet: Learning-based deformable registration for realistic cardiac MR sequence generation from a single frame. Medical Image Anal. Arezoo Zakeri, Alireza Hokmabadi, Ning Bi, Isuru Wijesinghe, Michael G. Nix, Steffen E. Petersen, Alejandro F. Frangi, Zeike A. Taylor, Ali Gooya
2023	J	`jnl`	Toxicity Prediction in Pelvic Radiotherapy Using Multiple Instance Learning and Cascaded Attention Layers. IEEE J. Biomed. Health Informatics Behnaz Elhaminia, Alexandra Gilbert, John Lilley, Moloud Abdar, Alejandro F. Frangi, Andrew F. Scarsbrook, Ane Appelt, Ali Gooya
2022	J	`jnl`	A probabilistic deep motion model for unsupervised cardiac shape anomaly assessment. Medical Image Anal. Arezoo Zakeri, Alireza Hokmabadi, Nishant Ravikumar, Alejandro F. Frangi, Ali Gooya
2022	—	`conf`	Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups. MIDL Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya
2022	J	`jnl`	Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups. CoRR Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya
2020	J	`jnl`	A Multi-Organ Nucleus Segmentation Challenge. IEEE Trans. Medical Imaging Neeraj Kumar, Ruchika Verma, Deepak Anand, Yanning Zhou, Omer Fahri Onder, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng, Jiahui Li, Zhiqiang Hu, Yunzhi Wang, Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot, Xuhua Ren, Sihang Zhou, Qian Wang, Dinggang Shen, Cheng-Kun Yang, Chi-Hung Weng, Wei-Hsiang Yu, Chao-Yuan Yeh, Shuang Yang, Shuoyu Xu, Pak-Hei Yeung, Peng Sun, Amirreza Mahbod, Gerald Schaefer, Isabella Ellinger, Rupert Ecker, Örjan Smedby, Chunliang Wang, Benjamin Chidester, That-Vinh Ton, Minh-Triet Tran, Jian Ma, Minh N. Do, Simon Graham, Quoc Dang Vu, Jin Tae Kwak, Akshaykumar Gunda, Raviteja Chunduri, Corey Hu, Xiaoyang Zhou, Dariush Lotfi, Reza Safdari, Antanas Kascenas, Alison O'Neil, Dennis Eschweiler, Johannes Stegmaier, Yanping Cui, Baocai Yin, Kailin Chen, Xinmei Tian, Philipp Grüning, Erhardt Barth, Elad Arbel, Itay Remer, Amir Ben-Dor, Ekaterina Sirazitdinova, Matthias Kohl, Stefan Braunewell, Yuexiang Li, Xinpeng Xie, Linlin Shen, Jun Ma, Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M. Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Aníbal Pedraza, Maria Gloria Bueno, Sabarinathan Devanathan, Saravanan Radhakrishnan, Praveen Koduganty, Zihan Wu, Guanyu Cai, Xiaojie Liu, Yuqin Wang, Amit Sethi
2019	J	`jnl`	Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging With Fisher-Discriminative 3-D CNN. IEEE Trans. Biomed. Eng. Le Zhang, Ali Gooya, Marco Pereañez, Bo Dong, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi
2019	J	`jnl`	Bayesian Polytrees With Learned Deep Features for Multi-Class Cell Segmentation. IEEE Trans. Image Process. Hamid Fehri, Ali Gooya, Yuanjun Lu, Erik Meijering, Simon A. Johnston, Alejandro F. Frangi
2019	J	`jnl`	Generalised coherent point drift for group-wise multi-dimensional analysis of diffusion brain MRI data. Medical Image Anal. Nishant Ravikumar, Ali Gooya, Leandro Beltrachini, Alejandro F. Frangi, Zeike A. Taylor
2019	J	`jnl`	High Throughput Computation of Reference Ranges of Biventricular Cardiac Function on the UK Biobank Population Cohort. CoRR Rahman Attar, Marco Pereañez, Ali Gooya, Xènia Albà, Le Zhang, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi
2019	—	`conf`	Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware Deep Learning Framework. MICCAI (1) Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2019	J	`jnl`	Quantitative CMR population imaging on 20, 000 subjects of the UK Biobank imaging study: LV/RV quantification pipeline and its evaluation. Medical Image Anal. Rahman Attar, Marco Pereañez, Ali Gooya, Xènia Albà, Le Zhang, Milton Hoz de Vila, Aaron M. Lee, Nay Aung, Elena Lukaschuk, Mihir M. Sanghvi, Kenneth Fung, José Miguel Paiva, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi
2019	—	`ed.`	Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Proceedings SASHIMI@MICCAI Ninon Burgos, Ali Gooya, David Svoboda
2019	J	`jnl`	Supervised Saliency Map Driven Segmentation of Lesions in Dermoscopic Images. IEEE J. Biomed. Health Informatics Mostafa Jahanifar, Neda Zamani Tajeddin, Babak Mohammadzadeh Asl, Ali Gooya
2018	J	`jnl`	Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging with Fisher-Discriminative 3D CNN. CoRR Le Zhang, Ali Gooya, Marco Pereañez, Bo Dong, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi
2018	J	`jnl`	Group-wise similarity registration of point sets using Student's t-mixture model for statistical shape models. Medical Image Anal. Nishant Ravikumar, Ali Gooya, Serkan Çimen, Alejandro F. Frangi, Zeike A. Taylor
2018	—	`conf`	High Throughput Computation of Reference Ranges of Biventricular Cardiac Function on the UK Biobank Population Cohort. STACOM@MICCAI Rahman Attar, Marco Pereañez, Ali Gooya, Xènia Albà, Le Zhang, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Alejandro F. Frangi
2018	J	`jnl`	Leveraging Transfer Learning for Segmenting Lesions and their Attributes in Dermoscopy Images. CoRR Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot
2018	J	`jnl`	Mixture of Probabilistic Principal Component Analyzers for Shapes from Point Sets. IEEE Trans. Pattern Anal. Mach. Intell. Ali Gooya, Karim Lekadir, Isaac Castro-Mateos, José María Pozo, Alejandro F. Frangi
2018	—	`conf`	Nuclei Detection Using Mixture Density Networks. MLMI@MICCAI Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2018	J	`jnl`	Nuclei Detection Using Mixture Density Networks. CoRR Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2018	—	`ed.`	Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings SASHIMI@MICCAI Ali Gooya, Orcun Goksel, Ipek Oguz, Ninon Burgos
2018	J	`jnl`	Statistical Shape Modeling of the Left Ventricle: Myocardial Infarct Classification Challenge. IEEE J. Biomed. Health Informatics Avan Suinesiaputra, Pierre Ablin, Xènia Albà, Martino Alessandrini, Jack Allen, Wenjia Bai, Serkan Çimen, Peter Claes, Brett R. Cowan, Jan D'hooge, Nicolas Duchateau, Jan Ehrhardt, Alejandro F. Frangi, Ali Gooya, Vicente Grau, Karim Lekadir, Allen Lu, Anirban Mukhopadhyay, Ilkay Öksüz, Nripesh Parajuli, Xavier Pennec, Marco Pereañez, Catarina Pinto, Paolo Piras, Marc-Michel Rohé, Daniel Rueckert, Dennis Säring, Maxime Sermesant, Kaleem Siddiqi, Mahdi Tabassian, Luciano Teresi, Sotirios A. Tsaftaris, Matthias Wilms, Alistair A. Young, Xingyu Zhang, Pau Medrano-Gracia
2017	—	`conf`	Generalised Coherent Point Drift for Group-Wise Registration of Multi-dimensional Point Sets. MICCAI (1) Nishant Ravikumar, Ali Gooya, Alejandro F. Frangi, Zeike A. Taylor
2017	—	`conf`	Multi-class Image Segmentation in Fluorescence Microscopy Using Polytrees. IPMI Hamid Fehri, Ali Gooya, Simon A. Johnston, Alejandro F. Frangi
2017	J	`jnl`	Segmentation of Lesions in Dermoscopy Images Using Saliency Map And Contour Propagation. CoRR Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Babak Mohammadzadeh Asl
2017	—	`conf`	Semi-supervised Assessment of Incomplete LV Coverage in Cardiac MRI Using Generative Adversarial Nets. SASHIMI@MICCAI Le Zhang, Ali Gooya, Alejandro F. Frangi
2017	—	`ed.`	Simulation and Synthesis in Medical Imaging - Second International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10, 2017, Proceedings SASHIMI@MICCAI Sotirios A. Tsaftaris, Ali Gooya, Alejandro F. Frangi, Jerry L. Prince
2017	J	`jnl`	Vascular tree tracking and bifurcation points detection in retinal images using a hierarchical probabilistic model. Comput. Methods Programs Biomed. Soodeh Kalaie, Ali Gooya
2016	—	`conf`	A Multi-resolution T-Mixture Model Approach to Robust Group-Wise Alignment of Shapes. MICCAI (3) Nishant Ravikumar, Ali Gooya, Serkan Çimen, Alejandro F. Frangi, Zeike A. Taylor
2016	—	`conf`	Automated Quality Assessment of Cardiac MR Images Using Convolutional Neural Networks. SASHIMI@MICCAI Le Zhang, Ali Gooya, Bo Dong, Rui Hua, Steffen E. Petersen, Pau Medrano-Gracia, Alejandro F. Frangi
2016	—	`conf`	Direct Estimation of Wall Shear Stress from Aneurysmal Morphology: A Statistical Approach. MICCAI (3) Ali Sarrami-Foroushani, Toni Lassila, Jose M. Pozo, Ali Gooya, Alejandro F. Frangi
2016	J	`jnl`	Precision Imaging: more descriptive, predictive and integrative imaging. Medical Image Anal. Alejandro F. Frangi, Zeike A. Taylor, Ali Gooya
2016	—	`conf`	Reconstruction of Coronary Artery Centrelines from X-Ray Angiography Using a Mixture of Student's t-Distributions. MICCAI (3) Serkan Çimen, Ali Gooya, Nishant Ravikumar, Zeike A. Taylor, Alejandro F. Frangi
2016	J	`jnl`	Reconstruction of coronary arteries from X-ray angiography: A review. Medical Image Anal. Serkan Çimen, Ali Gooya, Michael Grass, Alejandro F. Frangi
2016	B	`conf`	Reconstruction of coronary artery centrelines from X-ray rotational angiography using a probabilistic mixture model. Image Processing Serkan Çimen, Ali Gooya, Alejandro F. Frangi
2016	B	`conf`	Robust group-wise rigid registration of point sets using t-mixture model. Image Processing Nishant Ravikumar, Ali Gooya, Alejandro F. Frangi, Zeike A. Taylor
2016	—	`ed.`	Simulation and Synthesis in Medical Imaging - First International Workshop, SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings SASHIMI@MICCAI Sotirios A. Tsaftaris, Ali Gooya, Alejandro F. Frangi, Jerry L. Prince
2015	J	`jnl`	A Bayesian Approach to Sparse Model Selection in Statistical Shape Models. SIAM J. Imaging Sci. Ali Gooya, Christos Davatzikos, Alejandro F. Frangi
2015	J	`jnl`	A novel multi-scale Hessian based spot enhancement filter for two dimensional gel electrophoresis images. Comput. Biol. Medicine Sina Shamekhi, Mohammad Hossein Miran Baygi, Bahareh Azarian, Ali Gooya
2015	—	`conf`	Joint Clustering and Component Analysis of Correspondenceless Point Sets: Application to Cardiac Statistical Modeling. IPMI Ali Gooya, Karim Lekadir, Xènia Albà, Andrew J. Swift, Jim M. Wild, Alejandro F. Frangi
2015	—	`conf`	Joint Clustering and Component Analysis of Spatio-Temporal Shape Patterns in Myocardial Infarction. STACOM@MICCAI Catarina Pinto, Serkan Çimen, Ali Gooya, Karim Lekadir, Alejandro F. Frangi
2013	—	`conf`	A Bayesian Approach for Construction of Sparse Statistical Shape Models Using Dirichlet Distribution. AE-CAI Ali Gooya, Elaheh Mousavi, Christos Davatzikos, Hongen Liao
2012	J	`jnl`	GLISTR: Glioma Image Segmentation and Registration. IEEE Trans. Medical Imaging Ali Gooya, Kilian M. Pohl, Michel Bilello, Luigi Cirillo, George Biros, Elias R. Melhem, Christos Davatzikos
2012	J	`jnl`	Generalization of geometrical flux maximizing flow on Riemannian manifolds for improved volumetric blood vessel segmentation. Comput. Medical Imaging Graph. Ali Gooya, Hongen Liao, Ichiro Sakuma
2011	J	`jnl`	Deformable Registration of Glioma Images Using EM Algorithm and Diffusion Reaction Modeling. IEEE Trans. Medical Imaging Ali Gooya, George Biros, Christos Davatzikos
2011	—	`conf`	Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model. MICCAI (2) Ali Gooya, Kilian M. Pohl, Michel Bilello, George Biros, Christos Davatzikos
2011	—	`conf`	Multi-parametric analysis and registration of brain tumors: Constructing statistical atlases and diagnostic tools of predictive value. EMBC Christos Davatzikos, Evangelia I. Zacharaki, Ali Gooya, Vanessa Clark
2010	—	`conf`	An EM algorithm for brain tumor image registration: A tumor growth modeling based approach. CVPR Workshops Ali Gooya, George Biros, Christos Davatzikos
2010	—	`conf`	Application of trace-norm and low-rank matrix decomposition for computational anatomy. CVPR Workshops Nematollah Batmanghelich, Ali Gooya, Stathis Kanterakis, Ben Taskar, Christos Davatzikos
2008	J	`jnl`	A Variational Method for Geometric Regularization of Vascular Segmentation in Medical Images. IEEE Trans. Image Process. Ali Gooya, Hongen Liao, Kiyoshi Matsumiya, Ken Masamune, Yoshitaka Masutani, Takeyoshi Dohi
2008	—	`conf`	Anisotropic Haralick Edge Detection Scheme with Application to Vessel Segmentation. MIAR Ali Gooya, Takeyoshi Dohi, Ichiro Sakuma, Hongen Liao
2008	—	`conf`	R-PLUS: A Riemannian Anisotropic Edge Detection Scheme for Vascular Segmentation. MICCAI (1) Ali Gooya, Takeyoshi Dohi, Ichiro Sakuma, Hongen Liao
2007	—	`conf`	A Shape Induced Anisotropic Flowfor Volumetric Vascular Segmentation in MRA. ISBI Ali Gooya, Hongen Liao, Kiyoshi Matsumiya, Ken Masamune, Takeyoshi Dohi
2007	—	`conf`	Effective Statistical Edge Integration Using a Flux Maximizing Scheme for Volumetric Vascular Segmentation in MRA. IPMI Ali Gooya, Hongen Liao, Kiyoshi Matsumiya, Ken Masamune, Takeyoshi Dohi
2006	—	`conf`	Pulsative Flow Segmentation in MRA Image Series by AR Modeling and EM Algorithm. MIAR Ali Gooya, Hongen Liao, Kiyoshi Matsumiya, Ken Masamune, Takeyoshi Dohi