Ali Cakmak

39 papers A 1B 4Misc 2Journal 23Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
BioMark: biomarker analysis tool.
BMC Bioinform.
Mehmet Ali Balikci, Cyrille Mesue Njume, Ali Cakmak
2025 J jnl
MetaboliticsDB: A Database of Metabolomics Analyses.
IEEE Trans. Comput. Biol. Bioinform.
M. Hasan Celik, Onurcan Ersen, Taj Saleh, Alper Dokay, Ahmet Enis Guven, Ali Cakmak
2023 J jnl
Predicting the predisposition to colorectal cancer based on SNP profiles of immune phenotypes using supervised learning models.
Medical Biol. Eng. Comput.
Ali Cakmak, Huzeyfe Ayaz, Soykan Arikan, Ali Reza Ibrahimzada, Seyda Demirkol, Dilara Sönmez, Mehmet T. Hakan, Saime T. Sürmen, Cem Horozoglu, Mehmet B. Dogan, Özlem Küçükhüseyin, Canan Cacina, Bayram Kiran, Ümit Zeybek, Mehmet Baysan, Ilhan Yaylim
2022 J jnl
Benchmarking Apache Spark and Hadoop MapReduce on Big Data Classification.
CoRR
Taha Tekdogan, Ali Cakmak
2021 — conf
Benchmarking Apache Spark and Hadoop MapReduce on Big Data Classification.
ICCBDC
Taha Tekdogan, Ali Cakmak
2021 J jnl
Personalized Metabolic Analysis of Diseases.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ali Cakmak, M. Hasan Celik
2021 J jnl
Using positional sequence patterns to estimate the selectivity of SQL LIKE queries.
Expert Syst. Appl.
Mehmet Aytimur, Ali Cakmak
2020 J jnl
Exploring the power of supervised learning methods for company name disambiguation in microblog posts.
Turkish J. Electr. Eng. Comput. Sci.
Esma Nafiye Polat, Ali Cakmak, Rabia Nuray-Turan
2020 J jnl
Scalable classification of organisms into a taxonomy using hierarchical supervised learners.
J. Bioinform. Comput. Biol.
Gihad N. Sohsah, Ali Reza Ibrahimzada, Huzeyfe Ayaz, Ali Cakmak
2020 J jnl
Using Positional Sequence Patterns to Estimate the Selectivity of SQL LIKE Queries.
CoRR
Mehmet Aytimur, Ali Cakmak
2019 J jnl
Interactive exploratory soccer data analytics.
INFOR Inf. Syst. Oper. Res.
Emrullah Delibas, Ali Uzun, Mehmet Fatih Inan, Onur Guzey, Ali Cakmak
2018 J jnl
Computational Modeling of Pass Effectiveness in Soccer.
Adv. Complex Syst.
Ali Cakmak, Ali Uzun, Emrullah Delibas
2018 J jnl
Estimating the selectivity of LIKE queries using pattern-based histograms.
Turkish J. Electr. Eng. Comput. Sci.
Mehmet Aytimur, Ali Cakmak
2014 J jnl
An online system for metabolic network analysis.
Database J. Biol. Databases Curation
Abdullah Ercument Cicek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Zehra Meral Özsoyoglu, Gultekin Özsoyoglu
2014 A conf
High Impact Academic Paper Prediction Using Temporal and Topological Features.
CIKM
Feruz Davletov, Ali Selman Aydin, Ali Cakmak
2013 — conf
PathCase-MAW: An Online Metabolic Network Analysis Workbench.
BCB
A. Ercüment Çiçek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Gultekin Özsoyoglu
2012 J jnl
A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis.
J. Bioinform. Comput. Biol.
Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu
2012 J jnl
PathCase-SB: integrating data sources and providing tools for systems biology research.
BMC Syst. Biol.
Sarp A. Coskun, Xinjian Qi, Ali Cakmak, En Cheng, A. Ercüment Çiçek, Lei Yang, Rishiraj Jadeja, Ranjan K. Dash, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2011 — conf
Computational interpretation of metabolomics measurements: steady-state metabolic network dynamics analysis.
BCB
Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Gultekin Özsoyoglu
2011 J jnl
PathCase-SB architecture and database design.
BMC Syst. Biol.
Ali Cakmak, Xinjian Qi, Sarp A. Coskun, Mitali Das, En Cheng, A. Ercüment Çiçek, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2010 Misc conf
Advanced querying interface for biochemical network databases.
SAC
Brendan Elliott, Stephen Mayes, Ali Cakmak, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2010 — conf
Analyzing metabolite measurements for automated prediction of underlying biological mechanisms.
BCB
Ali Cakmak, Arun Dsouza, Richard W. Hanson, Z. Meral Özsoyoglu
2010 — conf
Efficient query evaluation for DAG-shaped hierarchies.
BCB
En Cheng, Ali Cakmak, Z. Meral Özsoyoglu
2010 J jnl
Querying metabolism under Different Physiological Constraints.
J. Bioinform. Comput. Biol.
Ali Cakmak, Gultekin Özsoyoglu, Richard W. Hanson
2009 — conf
A web-based data source for metabolomics.
ISCIS
Ali Cakmak, Arun Dsouza, Richard W. Hanson, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2009 J jnl
Context-based literature digital collection search.
VLDB J.
Nattakarn Ratprasartporn, Jonathan Po, Ali Cakmak, Sulieman Bani-Ahmad, Gultekin Özsoyoglu
2009 J jnl
Corrigendum for Elliott, B.
Bioinform.
Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2009 — conf
PopulusLog: People information database.
ISCIS
Ali Cakmak, Mustafa Kirac, Gultekin Özsoyoglu
2008 J jnl
Discovering gene annotations in biomedical text databases.
BMC Bioinform.
Ali Cakmak, Gultekin Özsoyoglu
2008 J jnl
PathCase: pathways database system.
Bioinform.
Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
2008 B conf
Taxonomy-superimposed graph mining.
EDBT
Ali Cakmak, Gultekin Özsoyoglu
2007 Misc conf
Annotating Genes Using Textual Patterns.
Pacific Symposium on Biocomputing
Ali Cakmak, Gultekin Özsoyoglu
2007 — conf
Evaluating Different Ranking Functions for Context-Based Literature Search.
ICDE Workshops
Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali Cakmak, Jonathan Po, Gultekin Özsoyoglu
2007 B conf
Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways.
SSDBM
Ali Cakmak, Mustafa Kirac, Marc R. Reynolds, Z. Meral Özsoyoglu, Gultekin Özsoyoglu
2007 J jnl
Mining biological networks for unknown pathways.
Bioinform.
Ali Cakmak, Gultekin Özsoyoglu
2006 B conf
On Data and Visualization Models for Signaling Pathways.
SSDBM
Nattakarn Ratprasartporn, Ali Cakmak, Gultekin Özsoyoglu
2006 B conf
Task-Oriented Integrated Use of Biological Web Data Sources.
SSDBM
Mustafa Kirac, Ali Cakmak, Gultekin Özsoyoglu
2005 J jnl
Evaluating Publication Similarity Measures.
IEEE Data Eng. Bull.
Sulieman Bani-Ahmad, Ali Cakmak, Gultekin Özsoyoglu, Abdullah Al-Hamdani
2005 — conf
Evaluating Score and Publication Similarity Functions in Digital Libraries.
ICADL
Sulieman Bani-Ahmad, Ali Cakmak, Abdullah Al-Hamdani, Gultekin Özsoyoglu