Alfonso Rodríguez-Patón

88 papers B 7C 3Misc 3Journal 53Unranked 21
YearRankTypeTitle / Venue / Authors
2023 J jnl
MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network.
Briefings Bioinform.
Xue Li, Peifu Han, Wenqi Chen, Changnan Gao, Shuang Wang, Tao Song, Muyuan Niu, Alfonso Rodríguez-Patón
2022 J jnl
AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction.
Briefings Bioinform.
Shanchen Pang, Ying Zhang, Tao Song, Xudong Zhang, Xun Wang, Alfonso Rodríguez-Patón
2022 J jnl
KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer's disease drug repositions.
Appl. Intell.
Shudong Wang, Zhenzhen Du, Mao Ding, Alfonso Rodríguez-Patón, Tao Song
2022 J jnl
Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction.
Briefings Bioinform.
Xudong Zhang, Gan Wang, Xiangyu Meng, Shuang Wang, Ying Zhang, Alfonso Rodríguez-Patón, Jianmin Wang, Xun Wang
2021 J jnl
Monodirectional tissue P systems with channel states.
Inf. Sci.
Bosheng Song, Xiangxiang Zeng, Alfonso Rodríguez-Patón
2021 J jnl
Neural-like P systems with plasmids.
Inf. Comput.
Francis George C. Cabarle, Xiangxiang Zeng, Niall Murphy, Tao Song, Alfonso Rodríguez-Patón, Xiangrong Liu
2020 J jnl
Applying Evolutionary Metaheuristics for Parameter Estimation of Individual-Based Models.
CoRR
Antonio Prestes García, Alfonso Rodríguez-Patón
2020 J jnl
Computational methods for identifying the critical nodes in biological networks.
Briefings Bioinform.
Xiangrong Liu, Zengyan Hong, Juan Liu, Yuan Lin, Alfonso Rodríguez-Patón, Quan Zou, Xiangxiang Zeng
2020 J jnl
Deep Collaborative Filtering for Prediction of Disease Genes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiangxiang Zeng, Yinglai Lin, Yuying He, Linyuan Lü, Xiaoping Min, Alfonso Rodríguez-Patón
2020 — conf
LDCNN-DTI: A Novel Light Deep Convolutional Neural Network for Drug-Target Interaction Predictions.
BIBM
Shudong Wang, Zhenzhen Du, Mao Ding, Renteng Zhao, Alfonso Rodríguez-Patón, Tao Song
2019 J jnl
A Parallel Image Skeletonizing Method Using Spiking Neural P Systems with Weights.
Neural Process. Lett.
Tao Song, Shanchen Pang, Shaohua Hao, Alfonso Rodríguez-Patón, Pan Zheng
2019 J jnl
Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition.
IEEE Access
Tongmao Ma, Shaohua Hao, Xun Wang, Alfonso Rodríguez-Patón, Shudong Wang, Tao Song
2019 J jnl
Meta-Path Methods for Prioritizing Candidate Disease miRNAs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xuan Zhang, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
2019 J jnl
U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images.
IEEE Access
Tao Song, Fan Meng, Alfonso Rodríguez-Patón, Pibao Li, Pan Zheng, Xun Wang
2018 J jnl
A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment.
IEEE Access
Shanchen Pang, Tong Ding, Alfonso Rodríguez-Patón, Tao Song, Pan Zheng
2018 — conf
An Implementation of Elementary Arithmetic with Virus Machine.
Enjoying Natural Computing
Xiaoshan Yan, Xiangrong Liu, Xiangxiang Zeng, Alfonso Rodríguez-Patón
2018 — conf
LncRNA-disease association prediction based on neighborhood information aggregation in neural network.
BIBM
Hongjie Chen, Xun Wang, Xuan Zhang, Xiangxiang Zeng, Tao Song, Alfonso Rodríguez-Patón
2018 J jnl
Preface.
Nat. Comput.
Matteo Cavaliere, Alfonso Rodríguez-Patón
2018 J jnl
Spiking Neural P Systems With Colored Spikes.
IEEE Trans. Cogn. Dev. Syst.
Tao Song, Alfonso Rodríguez-Patón, Pan Zheng, Xiangxiang Zeng
2018 J jnl
Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets.
IEEE Access
Xiangxiang Zeng, Jiawei Lin, Chen Lin, Xiangrong Liu, Alfonso Rodríguez-Patón
2017 J jnl
Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments.
Nat. Comput.
David Benes, Alfonso Rodríguez-Patón, Petr Sosík
2017 — conf
Iteratively collective prediction of disease-gene associations through the incomplete network.
BIBM
Xiangyi Meng, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
2017 J jnl
P Systems Simulating Bacterial Conjugation: Universality and Properties.
Fundam. Informaticae
Andrei Paun, Alfonso Rodríguez-Patón
2017 — conf
Simulating multicell populations with an accelerated gro simulator.
ECAL
P. Martín Gutiérrez, Alfonso Rodríguez-Patón
2016 J jnl
EvoPER - An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast.
PeerJ Prepr.
Antonio Prestes García, Alfonso Rodríguez-Patón
2015 Misc conf
A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation.
PACBB
Antonio Prestes García, Alfonso Rodríguez-Patón
2015 J jnl
An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits.
Artif. Life
David Benes, Petr Sosík, Alfonso Rodríguez-Patón
2015 Misc conf
BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation.
PAAMS
Antonio Prestes García, Alfonso Rodríguez-Patón
2014 J jnl
DNA strand displacement system running logic programs.
Biosyst.
Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík
2014 J jnl
Probabilistic reasoning with a Bayesian DNA device based on strand displacement.
Nat. Comput.
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
2013 J jnl
P systems with proteins on membranes characterize PSPACE.
Theor. Comput. Sci.
Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón
2013 B conf
Probabilistic Reasoning with an Enzyme-Driven DNA Device.
DNA
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
2012 J jnl
DNA biosensors that reason.
Biosyst.
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
2012 — conf
Distributed Computing with Prokaryotic Immune Systems.
ICARIS
Niall Murphy, Alfonso Rodríguez-Patón
2012 B conf
Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement.
DNA
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
2011 J jnl
A review of the nondeterministic waiting time algorithm.
Nat. Comput.
John Jack, Andrei Paun, Alfonso Rodríguez-Patón
2011 B conf
Autonomous Resolution Based on DNA Strand Displacement.
DNA
Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík
2011 J jnl
On the Power of Families of Recognizer Spiking Neural P Systems.
Int. J. Found. Comput. Sci.
Petr Sosík, Alfonso Rodríguez-Patón, Ludek Cienciala
2011 J jnl
On the scalability of biocomputing algorithms: The case of the maximum clique problem.
Theor. Comput. Sci.
Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
2011 J jnl
P Systems with proteins on Membranes: a Survey.
Int. J. Found. Comput. Sci.
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, Manuela Sidoroff
2011 — conf
Poster: Biochemical signaling: A discrete simulation with memory enhancement.
ICCABS
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, John Jack
2011 — conf
Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton.
IWINAC (2)
Pablo Gómez Esteban, Alfonso Rodríguez-Patón
2011 J jnl
Spiking Neural P Systems with Several Types of Spikes.
Int. J. Comput. Commun. Control
Mihai Ionescu, Gheorghe Paun, Mario J. Pérez-Jiménez, Alfonso Rodríguez-Patón
2010 J jnl
Biomolecular Computing Devices in Synthetic Biology.
Int. J. Nanotechnol. Mol. Comput.
Jesús M. Miró Bueno, Alfonso Rodríguez-Patón
2010 C conf
Inference with DNA Molecules.
UC
Alfonso Rodríguez-Patón, José María Larrea, Iñaki Sainz de Murieta
2010 — conf
Polynomial Complexity Classes in Spiking Neural P Systems.
Int. Conf. on Membrane Computing
Petr Sosík, Alfonso Rodríguez-Patón, Lucie Ciencialová
2009 — conf
A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme.
IWANN (2)
Jesús M. Miró Bueno, Alfonso Rodríguez-Patón
2009 — ch.
Grammar-Guided Genetic Programming.
Encyclopedia of Artificial Intelligence
Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
2009 J jnl
On the Hopcroft's minimization technique for DFA and DFCA.
Theor. Comput. Sci.
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón
2009 — conf
On the Power of Computing with Proteins on Membranes.
Workshop on Membrane Computing
Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón, David Pérez
2009 J jnl
Sequential SNP systems based on min/max spike number.
Theor. Comput. Sci.
Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón
2009 J jnl
Spiking Neural P Systems: Stronger Normal Forms.
Int. J. Unconv. Comput.
Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík
2008 J jnl
Discrete Nondeterministic Modeling of the Fas Pathway.
Int. J. Found. Comput. Sci.
John Jack, Alfonso Rodríguez-Patón, Oscar H. Ibarra, Andrei Paun
2008 — conf
Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation.
Workshop on Membrane Computing
John Jack, Andrei Paun, Alfonso Rodríguez-Patón
2008 C conf
Hopcroft's Minimization Technique: Queues or Stacks?.
CIAA
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón
2008 J jnl
On the power of elementary features in spiking neural P systems.
Nat. Comput.
Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík
2008 B conf
Sequentiality Induced by Spike Number in SNP Systems.
DNA
Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón
2007 J jnl
A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem.
Biosyst.
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
2007 — conf
A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids.
IWINAC (1)
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón
2007 J jnl
Crossover and mutation operators for grammar-guided genetic programming.
Soft Comput.
Jorge Couchet, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
2007 J jnl
Initialization method for grammar-guided genetic programming.
Knowl. Based Syst.
Marc García-Arnau, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
2007 J jnl
Membrane computing and complexity theory: A characterization of PSPACE.
J. Comput. Syst. Sci.
Petr Sosík, Alfonso Rodríguez-Patón
2007 J jnl
Normal forms for spiking neural P systems.
Theor. Comput. Sci.
Oscar H. Ibarra, Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón, Petr Sosík, Sara Woodworth
2007 — conf
On Flip-Flop Membrane Systems with Proteins.
Workshop on Membrane Computing
Andrei Paun, Alfonso Rodríguez-Patón
2007 B conf
Towards a Robust Biocomputing Solution of Intractable Problems.
DNA
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
2007 J jnl
Towards a lessons learned system for critical software.
Reliab. Eng. Syst. Saf.
Javier Andrade Garda, Juan Ares Casal, Rafael García, Juan Pazos, Santiago Rodríguez Yáñez, Alfonso Rodríguez-Patón, Andrés Silva
2006 J jnl
Algebraic properties of substitution on trajectories.
Theor. Comput. Sci.
Michael Domaratzki, Petr Sosík, Alfonso Rodríguez-Patón
2006 J jnl
Evolutionary system for automatically constructing and adapting radial basis function networks.
Neurocomputing
Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
2006 — conf
Initialization Method for Grammar-Guided Genetic Programming.
SGAI Conf.
Marc García-Arnau, Daniel Manrique, J. Ríos, Alfonso Rodríguez-Patón
2006 B conf
P Systems with Active Membranes Characterize PSPACE.
DNA
Petr Sosík, Alfonso Rodríguez-Patón
2006 — conf
P Systems with Symport/Antiport and Time.
Workshop on Membrane Computing
Hitesh Nagda, Andrei Paun, Alfonso Rodríguez-Patón
2005 J jnl
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem.
Soft Comput.
Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón
2005 J jnl
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem.
Soft Comput.
Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón
2005 — conf
Grammar Based Crossover Operator in Genetic Programming.
IWINAC (2)
Daniel Manrique, Fernando Márquez, Juan Rios, Alfonso Rodríguez-Patón
2005 J jnl
Symport/Antiport P Systems with Three Objects Are Universal.
Fundam. Informaticae
Gheorghe Paun, Mario J. Pérez-Jiménez, Juan Pazos, Alfonso Rodríguez-Patón
2004 — conf
A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems.
Aspects of Molecular Computing
Lucas Ledesma, Juan Pazos, Alfonso Rodríguez-Patón
2003 — conf
Restricted Concatenation Inspired by DNA Strand Assembly
Grammars and Automata for String Processing
Carlos Martín-Vide, Alfonso Rodríguez-Patón
2003 — conf
Solving SAT in Linear Time with a Neural-Like Membrane System.
IWANN (1)
Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva
2003 J jnl
Tissue P systems.
Theor. Comput. Sci.
Carlos Martín-Vide, Gheorghe Paun, Juan Pazos, Alfonso Rodríguez-Patón
2002 Misc conf
A New Class of Symbolic Abstract Neural Nets: Tissue P Systems.
COCOON
Carlos Martín-Vide, Juan Pazos, Gheorghe Paun, Alfonso Rodríguez-Patón
2002 B conf
MEGICO: An Intelligent Knowledge Management Methodology.
EKAW
José Luis Maté, Luis Felipe Paradela, Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva
2002 J jnl
On the Power of P Systems with DNA-Worm-Objects.
Fundam. Informaticae
José Luis Maté, Alfonso Rodríguez-Patón, Andrés Silva
2001 J jnl
Further Remarks on P Systems with Symport Rules.
Sci. Ann. Cuza Univ.
Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón
2001 J jnl
On P Systems with Membrane Creation.
Comput. Sci. J. Moldova
Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón
2001 J jnl
On the Universality of P Systems with Membrane Creation.
Bull. EATCS
Alfonso Rodríguez-Patón
2000 C conf
Computing with Membranes: P Systems with Worm-Objects.
SPIRE
Juan Castellanos, Gheorghe Paun, Alfonso Rodríguez-Patón
2000 J jnl
Conditional Concatenation.
Fundam. Informaticae
Jürgen Dassow, Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón
1998 — conf
Molecular Computation for Genetic Algorithms.
Rough Sets and Current Trends in Computing
Juan Castellanos, S. Leiva, Jose Rodrigo, Alfonso Rodríguez-Patón