Alexey Markin

28 papers A 1C 1Misc 3Journal 16Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
Computing generalized cophenetic distances under all Lp norms: A near-linear time algorithmic framework.
PLoS Comput. Biol.
Pawel Górecki, Alexey Markin, Sriram Vijendran, Oliver Eulenstein
2025 J jnl
Ordered Leaf Attachment (OLA) Vectors can Identify Reticulation Events even in Multifurcated Trees.
CoRR
Alexey Markin, Tavis K. Anderson
2025 J jnl
Phylo-rs: an extensible phylogenetic analysis library in rust.
BMC Bioinform.
Sriram Vijendran, Tavis K. Anderson, Alexey Markin, Oliver Eulenstein
2024 J jnl
Asymmetric Cluster-Based Measures for Comparative Phylogenetics.
J. Comput. Biol.
Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
2023 J jnl
Phylogenetic diversity statistics for all clades in a phylogeny.
Bioinform.
Siddhant Grover, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein
2023 — conf
The Asymmetric Cluster Affinity Cost.
RECOMB-CG
Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein
2022 A conf
CPTAM: Constituency Parse Tree Aggregation Method.
SDM
Adithya Kulkarni, Nasim Sabetpour, Alexey Markin, Oliver Eulenstein, Qi Li
2022 J jnl
CPTAM: Constituency Parse Tree Aggregation Method.
CoRR
Adithya Kulkarni, Nasim Sabetpour, Alexey Markin, Oliver Eulenstein, Qi Li
2022 J jnl
RF-Net 2: fast inference of virus reassortment and hybridization networks.
Bioinform.
Alexey Markin, Sanket Wagle, Tavis K. Anderson, Oliver Eulenstein
2021 J jnl
Consensus of All Solutions for Intractable Phylogenetic Tree Inference.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pawel Tabaszewski, Pawel Górecki, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein
2021 J jnl
Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model.
Bioinform.
Alexey Markin, Oliver Eulenstein
2021 J jnl
Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming.
J. Comput. Biol.
Jaroslaw Paszek, Alexey Markin, Pawel Górecki, Oliver Eulenstein
2020 J jnl
Finding orthologous gene blocks in bacteria: the computational hardness of the problem and novel methods to address it.
Bioinform.
Huy N. Nguyen, Alexey Markin, Iddo Friedberg, Oliver Eulenstein
2020 — conf
Integer Linear Programming Formulation for the Unified Duplication-Loss-Coalescence Model.
ISBRA
Javad Ansarifar, Alexey Markin, Pawel Górecki, Oliver Eulenstein
2020 J jnl
On the extremal maximum agreement subtree problem.
Discret. Appl. Math.
Alexey Markin
2019 J jnl
Computing Manhattan Path-Difference Median Trees: A Practical Local Search Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexey Markin, Oliver Eulenstein
2019 C conf
Consensus Clusters in Robinson-Foulds Reticulation Networks.
WABI
Alexey Markin, Oliver Eulenstein
2019 J jnl
Cophenetic Median Trees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexey Markin, Oliver Eulenstein
2019 J jnl
Efficient Local Search for Euclidean Path-Difference Median Trees.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexey Markin, Oliver Eulenstein
2019 Misc conf
Feasibility Algorithms for the Duplication-Loss Cost.
COCOON
Pawel Górecki, Alexey Markin, Oliver Eulenstein
2019 — conf
Robinson-Foulds Reticulation Networks.
BCB
Alexey Markin, Tavis K. Anderson, Venkata Sai Krishna Teja Vadali, Oliver Eulenstein
2018 Misc conf
Cophenetic Distances: A Near-Linear Time Algorithmic Framework.
COCOON
Pawel Górecki, Alexey Markin, Oliver Eulenstein
2018 J jnl
On the Extremal Maximum Agreement Subtree Problem.
CoRR
Alexey Markin
2018 Misc conf
Solving the Gene Duplication Feasibility Problem in Linear Time.
COCOON
Alexey Markin, Venkata Sai Krishna Teja Vadali, Oliver Eulenstein
2017 — conf
Cophenetic Median Trees Under the Manhattan Distance.
BCB
Alexey Markin, Oliver Eulenstein
2017 — conf
Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees.
ISBRA
Pawel Górecki, Alexey Markin, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein
2016 — conf
Manhattan Path-Difference Median Trees.
BCB
Alexey Markin, Oliver Eulenstein
2016 — conf
Path-Difference Median Trees.
ISBRA
Alexey Markin, Oliver Eulenstein