Alexej Abyzov

18 papers B 1Journal 17
YearRankTypeTitle / Venue / Authors
2024 J jnl
Genome-wide analysis and visualization of copy number with CNVpytor in igv.js.
Bioinform.
Arijit Panda, Milovan Suvakov, Helga Thorvaldsdóttir, Jill P. Mesirov, James T. Robinson, Alexej Abyzov
2022 J jnl
All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.
PLoS Comput. Biol.
Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov
2022 J jnl
Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.
PLoS Comput. Biol.
Vivekananda Sarangi, Yeongjun Jang, Milovan Suvakov, Taejeong Bae, Liana Fasching, Shobana Sekar, Livia Tomasini, Jessica Mariani, Flora Vaccarino, Alexej Abyzov
2022 B conf
OpBerg: Discovering Causal Sentences Using Optimal Alignments.
DaWaK
Justin Wood, Nicholas J. Matiasz, Alcino J. Silva, William Hsu, Alexej Abyzov, Wei Wang
2021 J jnl
LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads.
Bioinform.
Quang Tran, Alexej Abyzov
2020 J jnl
SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.
BMC Bioinform.
Vivekananda Sarangi, Alexandre Jourdon, Taejeong Bae, Arijit Panda, Flora Vaccarino, Alexej Abyzov
2019 J jnl
OpBerg: Discovering causal sentences using optimal alignments.
CoRR
Justin Wood, Nicholas J. Matiasz, Alcino J. Silva, William Hsu, Alexej Abyzov, Wei Wang
2017 J jnl
Landscape and variation of novel retroduplications in 26 human populations.
PLoS Comput. Biol.
Yan Zhang, Shantao Li, Alexej Abyzov, Mark B. Gerstein
2015 J jnl
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
Bioinform.
Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam
2015 J jnl
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.
Bioinform.
John C. Mu, Marghoob Mohiyuddin, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. Wong, Hugo Y. K. Lam
2011 J jnl
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision.
Bioinform.
Alexej Abyzov, Mark Gerstein
2010 J jnl
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
PLoS Comput. Biol.
Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein
2008 J jnl
An AP Endonuclease 1-DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces.
PLoS Comput. Biol.
Alexej Abyzov, Alper Uzun, Phyllis R. Strauss, Valentin A. Ilyin
2007 J jnl
Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.
Nucleic Acids Res.
Alper Uzun, Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
2007 J jnl
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method.
Nucleic Acids Res.
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
2005 J jnl
Active Site Prediction for Comparative Model Structures with Thematics.
J. Bioinform. Comput. Biol.
Ihsan A. Shehadi, Alexej Abyzov, Alper Uzun, Ying Wei, Leonel F. Murga, Valentin A. Ilyin, Mary Jo Ondrechen
2005 J jnl
Friend, an integrated analytical front-end application for bioinformatics.
Bioinform.
Alexej Abyzov, Mounir Errami, Chesley M. Leslin, Valentin A. Ilyin
2004 J jnl
Structural exon database, SEDB, mapping exon boundaries on multiple protein structures.
Bioinform.
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin