Alexei J. Drummond

22 papers B 1C 2Journal 18Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities.
PLoS Comput. Biol.
Lars Berling, Jonathan Klawitter, Remco R. Bouckaert, Dong Xie, Alex Gavryushkin, Alexei J. Drummond
2025 J jnl
Credible Sets of Phylogenetic Tree Topology Distributions.
CoRR
Jonathan Klawitter, Alexei J. Drummond
2023 J jnl
LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses.
PLoS Comput. Biol.
Alexei J. Drummond, Kylie Chen, Fábio K. Mendes, Dong Xie
2021 J jnl
Bayesian inference of the climbing grade scale.
CoRR
Alexei J. Drummond, Alex Popinga
2020 J jnl
Bayesian inference and comparison of stochastic transcription elongation models.
PLoS Comput. Biol.
Jordan Douglas, Richard Kingston, Alexei J. Drummond
2019 J jnl
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
PLoS Comput. Biol.
Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond
2019 J jnl
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration.
PLoS Comput. Biol.
Jing Yang, Nicola F. Müller, Remco R. Bouckaert, Bing Xu, Alexei J. Drummond
2014 J jnl
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.
PLoS Comput. Biol.
Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond
2014 J jnl
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration.
PLoS Comput. Biol.
Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J. Drummond
2014 J jnl
Efficient Bayesian inference under the structured coalescent.
Bioinform.
Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond
2014 J jnl
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol.
Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
2013 — conf
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.
IWBBIO
Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey
2013 J jnl
Recursive algorithms for phylogenetic tree counting.
Algorithms Mol. Biol.
Alexandra Gavryushkina, David Welch, Alexei J. Drummond
2012 J jnl
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data.
Bioinform.
Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane S. Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran, Tobias Thierer, Bruce Ashton, Peter L. Meintjes, Alexei J. Drummond
2010 J jnl
A retrodictive stochastic simulation algorithm.
J. Comput. Phys.
Timothy G. Vaughan, Peter D. Drummond, Alexei J. Drummond
2009 J jnl
Bayesian Phylogeography Finds Its Roots.
PLoS Comput. Biol.
Philippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard
2008 C conf
Clock-constrained tree proposal operators in Bayesian phylogenetic inference.
BIBE
Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond
2007 J jnl
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics.
PLoS Comput. Biol.
Philippe Lemey, Sergei L. Kosakovsky Pond, Alexei J. Drummond, Oliver G. Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut
2005 J jnl
Bayesian coestimation of phylogeny and sequence alignment.
BMC Bioinform.
Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein
2004 B conf
A Brief Introduction to the Phylogentics Analysis Library V1.5.
APBC
Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo
2003 C conf
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.
WABI
Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein
2001 J jnl
PAL: an object-oriented programming library for molecular evolution and phylogenetics.
Bioinform.
Alexei J. Drummond, Korbinian Strimmer