Alexandre P. Francisco

83 papers A 3B 4C 4Misc 2Journal 58Unranked 12
YearRankTypeTitle / Venue / Authors
2026 J jnl
AIdentifyAGE Ontology for Decision Support in Forensic Dental Age Assessment.
CoRR
Renato Marcelo, Ana Rodrigues, Cristiana Palmela Pereira, António Figueiras, Rui Santos, José Rui Figueira, Alexandre P. Francisco, Cátia Vaz
2025 A conf
Accelerating Graph Neural Networks Using a Novel Computation-Friendly Matrix Compression Format.
IPDPS
João Nuno Ferreira Alves, Samir Moustafa, Siegfried Benkner, Alexandre P. Francisco, Wilfried N. Gansterer, Luís M. S. Russo
2025 J jnl
Survey: Graph Databases.
CoRR
Miguel E. Coimbra, Lucie Svitáková, Alexandre P. Francisco, Luís Veiga
2024 J jnl
A modular and scalable web platform for computational phylogenetics.
CoRR
Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
2024 J jnl
A multi-objective mixed integer linear programming model for thesis defence scheduling.
Eur. J. Oper. Res.
João Almeida, Daniel Santos, José Rui Figueira, Alexandre P. Francisco
2024 J jnl
Accelerating Graph Neural Networks with a Novel Matrix Compression Format.
CoRR
João Nuno Ferreira Alves, Samir Moustafa, Siegfried Benkner, Alexandre P. Francisco, Wilfried N. Gansterer, Luís M. S. Russo
2024 J jnl
Computing RF Tree Distance over Succinct Representations.
Algorithms
António Pedro Branco, Cátia Vaz, Alexandre P. Francisco
2024 J jnl
phyloDB: A framework for large-scale phylogenetic analysis of sequence based typing data.
SoftwareX
Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco
2023 A conf
A Novel Triangular Space-Filling Curve for Cache-Oblivious In-Place Transposition of Square Matrices.
IPDPS
João Nuno Ferreira Alves, Luís M. S. Russo, Alexandre P. Francisco, Siegfried Benkner
2023 J jnl
On Finding Optimal (Dynamic) Arborescences.
Algorithms
Joaquim Espada, Alexandre P. Francisco, Tatiana Rocher, Luís M. S. Russo, Cátia Vaz
2023 J jnl
On Finding Optimal (Dynamic) Arborescences.
CoRR
Joaquim Espada, Alexandre P. Francisco, Tatiana Rocher, Luís M. S. Russo, Cátia Vaz
2023 J jnl
Phylogenetic tree distance computation over succinct representations.
CoRR
António Pedro Branco, Cátia Vaz, Alexandre P. Francisco
2023 J jnl
phyloDB: A framework for large-scale phylogenetic analysis.
CoRR
Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco
2022 J jnl
A practical succinct dynamic graph representation.
Inf. Comput.
Miguel E. Coimbra, Joana Hrotkó, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
2022 J jnl
Cache-oblivious Hilbert Curve-based Blocking Scheme for Matrix Transposition.
ACM Trans. Math. Softw.
João Nuno Ferreira Alves, Luís Manuel Silveira Russo, Alexandre P. Francisco
2022 J jnl
Correction to: Graph Compression for Adjacency-Matrix Multiplication.
SN Comput. Sci.
Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro
2022 J jnl
Graph Compression for Adjacency-Matrix Multiplication.
SN Comput. Sci.
Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro
2022 J jnl
Order-preserving pattern matching indeterminate strings.
Inf. Comput.
Luís M. S. Russo, Diogo M. Costa, Rui Henriques, Hideo Bannai, Alexandre P. Francisco
2022 J jnl
VeilGraph: incremental graph stream processing.
J. Big Data
Miguel E. Coimbra, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga
2021 J jnl
An analysis of the graph processing landscape.
J. Big Data
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
2021 J jnl
Distance-based phylogenetic inference from typing data: a unifying view.
Briefings Bioinform.
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
2021 A conf
Eliciting Fairness in Multiplayer Bargaining through Network-Based Role Assignment.
AAMAS
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
2021 J jnl
Eliciting Fairness in N-Player Network Games through Degree-Based Role Assignment.
Complex.
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
2021 J jnl
Evolution of collective fairness in complex networks through degree-based role assignment.
CoRR
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
2021 J jnl
Small Longest Tandem Scattered Subsequences.
Sci. Ann. Comput. Sci.
Luís M. S. Russo, Alexandre P. Francisco
2020 B conf
Approximating Optimal Bidirectional Macro Schemes.
DCC
Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco
2020 J jnl
Approximating Optimal Bidirectional Macro Schemes.
CoRR
Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco
2020 J jnl
Distance-based phylogenetic inference from typing data: a unifying view.
CoRR
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
2020 J jnl
Hardness of Modern Games.
CoRR
Diogo M. Costa, Alexandre P. Francisco, Luís M. S. Russo
2020 J jnl
Incremental Multiple Longest Common Sub-Sequences.
CoRR
Luís M. S. Russo, Alexandre P. Francisco, Tatiana Rocher
2020 B conf
On Dynamic Succinct Graph Representations.
DCC
Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
2020 J jnl
Small Longest Tandem Scattered Subsequences.
CoRR
Luís M. S. Russo, Alexandre P. Francisco
2020 J jnl
Sparsifying Parity-Check Matrices.
CoRR
Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika
2020 J jnl
Sparsifying parity-check matrices.
Appl. Soft Comput.
Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika
2019 J jnl
Distributed graphs: in search of fast, low-latency, resource-efficient, semantics-rich Big-Data processing.
CoRR
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
2019 J jnl
On dynamic succinct graph representations.
CoRR
Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
2019 J jnl
Order-Preserving Pattern Matching Indeterminate Strings.
CoRR
Diogo M. Costa, Luís M. S. Russo, Rui Henriques, Hideo Bannai, Alexandre P. Francisco
2018 — conf
Capturing Financial Volatility Through Simple Network Measures.
COMPLEX NETWORKS (2)
Pedro C. Souto, Andreia Sofia Teixeira, Alexandre P. Francisco, Francisco C. Santos
2018 B conf
Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication.
DCC
Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro
2018 J jnl
Fast phylogenetic inference from typing data.
Algorithms Mol. Biol.
João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz
2018 Misc conf
Gelly-scheduling: distributed graph processing for service placement in community networks.
SAC
Miguel E. Coimbra, Mennan Selimi, Alexandre P. Francisco, Felix Freitag, Luís Veiga
2018 J jnl
GraphBolt: Streaming Graph Approximations on Big Data.
CoRR
Miguel E. Coimbra, Renato Rosa, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga
2018 J jnl
Large-Scale Simulations of Bacterial Populations Over Complex Networks.
J. Comput. Biol.
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
2018 J jnl
Linking and Cutting Spanning Trees.
Algorithms
Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco
2018 J jnl
Linking and Cutting Spanning Trees.
CoRR
Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco
2018 B conf
Order-Preserving Pattern Matching Indeterminate Strings.
CPM
Rui Henriques, Alexandre P. Francisco, Luís M. S. Russo, Hideo Bannai
2018 J jnl
SpliceTAPyR - An Efficient Method for Transcriptome Alignment.
Int. J. Found. Comput. Sci.
Andreia Sofia Teixeira, Francisco Fernandes, Alexandre P. Francisco
2018 J jnl
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients.
IEEE ACM Trans. Comput. Biol. Bioinform.
Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira
2017 J jnl
Beyond NGS data sharing and towards open science.
CoRR
Bruno Dantas, Calmenelias Fleitas, Alexandre P. Francisco, José Simão, Cátia Vaz
2017 — conf
Dynamic Phylogenetic Inference for Sequence-based Typing Data.
BCB
Alexandre P. Francisco, Marta Nascimento, Cátia Vaz
2017 J jnl
Exploiting Computation-Friendly Graph Compression Methods.
CoRR
Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro
2017 J jnl
Gelly-Scheduling: Distributed Graph Processing for Network Service Placement.
CoRR
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
2017 — conf
NGSPipes: Fostering Reproducibility and Scalability in Biosciences.
BCB
Bruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco, José Simão, Cátia Vaz
2017 J jnl
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.
Bioinform.
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
2017 J jnl
Study on Resource Efficiency of Distributed Graph Processing.
CoRR
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
2017 C conf
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time.
WABI
Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz
2017 C conf
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks.
ICA3PP
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
2016 J jnl
Evaluating the impact of k-anonymization on the inference of interaction networks.
Trans. Data Priv.
Pedro Rijo, Alexandre P. Francisco, Mário J. Silva
2016 J jnl
Extending quick hypervolume.
J. Heuristics
Luís M. S. Russo, Alexandre P. Francisco
2016 — conf
Influence and Sentiment Homophily on Twitter Social Circles.
CompleNet
Hugo Lopes, Helena Sofia Pinto, Alexandre P. Francisco
2016 J jnl
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.
Nucleic Acids Res.
Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço
2016 — conf
Spanning Edge Betweenness in Practice.
CompleNet
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco
2015 J jnl
Betweenness centrality in Delay Tolerant Networks: A survey.
Ad Hoc Networks
Naércio Magaia, Alexandre P. Francisco, Paulo Rogério Pereira, Miguel Correia
2014 — conf
Evaluating the Impact of Anonymization on Large Interaction Network Datasets.
PSBD@CIKM
Mário J. Silva, Pedro Rijo, Alexandre P. Francisco
2014 J jnl
Quick Hypervolume.
IEEE Trans. Evol. Comput.
Luís M. S. Russo, Alexandre P. Francisco
2014 — conf
Real-Time Integration of Building Energy Data.
BigData Congress
Diogo Anjos, Paulo Carreira, Alexandre P. Francisco
2014 J jnl
TypOn: the microbial typing ontology.
J. Biomed. Semant.
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
2012 J jnl
Mining query log graphs towards a query folksonomy.
Concurr. Comput. Pract. Exp.
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
2012 J jnl
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.
BMC Bioinform.
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
2012 J jnl
Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.
Algorithms Mol. Biol.
Susana Vinga, Alexandra M. Carvalho, Alexandre P. Francisco, Luís M. S. Russo, Jonas S. Almeida
2012 J jnl
Quick HyperVolume
CoRR
Luís M. S. Russo, Alexandre P. Francisco
2011 Misc conf
Baiacu: A Tool for the Visual Analysis of the
PACBB
Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira
2011 J jnl
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.
Bioinform.
Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira
2011 J jnl
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in
Nucleic Acids Res.
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
2010 — conf
An Ontology and a REST API for Sequence Based Microbial Typing Data.
JBI
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
2010 — conf
Fully Generalized Graph Cores.
CompleNet
Alexandre P. Francisco, Arlindo L. Oliveira
2010 C conf
Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy.
SPIRE
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
2010 — conf
On Community Detection in Very Large Networks.
CompleNet
Alexandre P. Francisco, Arlindo L. Oliveira
2010 — conf
Using graph modularity analysis to identify transcription factor binding sites.
BIBM Workshops
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
2009 J jnl
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.
BMC Bioinform.
Alexandre P. Francisco, Miguel M. F. Bugalho, Mário Ramirez, João A. Carriço
2008 C conf
Clique Analysis of Query Log Graphs.
SPIRE
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
2008 — conf
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
ISBRA
Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas
2008 J jnl
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in
Nucleic Acids Res.
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas