Alexandre G. de Brevern

30 papers C 1Journal 28Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
SWORD2: hierarchical analysis of protein 3D structures.
Nucleic Acids Res.
Gabriel Cretin, Tatiana Galochkina, Yann Vander Meersche, Alexandre G. de Brevern, Guillaume Postic, Jean-Christophe Gelly
2022 J jnl
Shaking the β-Bulges.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2019 J jnl
Benchmarking the PEPOP methods for mimicking discontinuous epitopes.
BMC Bioinform.
Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau
2019 J jnl
PEPOP 2.0: new approaches to mimic non-continuous epitopes.
BMC Bioinform.
Vincent Demolombe, Alexandre G. de Brevern, Liza Figueredo Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau
2019 J jnl
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.
Source Code Biol. Medicine
Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2018 J jnl
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.
PLoS Comput. Biol.
Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan
2015 J jnl
Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.
Bioinform.
Yassine Ghouzam, Guillaume Postic, Alexandre G. de Brevern, Jean-Christophe Gelly
2014 J jnl
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins.
Database J. Biol. Databases Curation
Pierrick Craveur, Joseph Rebehmed, Alexandre G. de Brevern
2014 J jnl
PolyprOnline: polyproline helix II and secondary structure assignment database.
Database J. Biol. Databases Curation
Romain Chebrek, Sylvain Léonard, Alexandre G. de Brevern, Jean-Christophe Gelly
2013 J jnl
DoSA: Database of Structural Alignments.
Database J. Biol. Databases Curation
Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan
2013 J jnl
VLDP web server: a powerful geometric tool for analysing protein structures in their environment.
Nucleic Acids Res.
Jeremy Esque, Sylvain Léonard, Alexandre G. de Brevern, Christophe Oguey
2012 J jnl
PredyFlexy: flexibility and local structure prediction from sequence.
Nucleic Acids Res.
Alexandre G. de Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly
2011 J jnl
Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts.
J. Chem. Inf. Model.
Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern
2011 J jnl
Protein Peeling 3D: new tools for analyzing protein structures.
Bioinform.
Jean-Christophe Gelly, Alexandre G. de Brevern
2011 J jnl
iPBA: a tool for protein structure comparison using sequence alignment strategies.
Nucleic Acids Res.
Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern
2010 J jnl
A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation.
J. Chem. Inf. Model.
Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern
2010 J jnl
Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site.
J. Cheminformatics
Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud
2009 J jnl
Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site.
J. Comput. Aided Mol. Des.
Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud
2009 J jnl
Protein short loop prediction in terms of a structural alphabet.
Comput. Biol. Chem.
Manoj Tyagi, Aurélie Bornot, Bernard O. Offmann, Alexandre G. de Brevern
2006 J jnl
'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.
Bioinform.
Jean-Christophe Gelly, Alexandre G. de Brevern, Serge A. Hazout
2006 J jnl
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.
Nucleic Acids Res.
Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann
2006 J jnl
Protein Peeling 2: a web server to convert protein structures into series of protein units.
Nucleic Acids Res.
Jean-Christophe Gelly, Catherine Etchebest, Serge A. Hazout, Alexandre G. de Brevern
2005 J jnl
New assessment of a structural alphabet.
Silico Biol.
Alexandre G. de Brevern
2004 J jnl
Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.
BMC Bioinform.
Alexandre G. de Brevern, Serge A. Hazout, Alain Malpertuy
2004 J jnl
Local backbone structure prediction of proteins.
Silico Biol.
Alexandre G. de Brevern, Cristina Benros, Romain Gautier, Hélène Valadié, Serge A. Hazout, Catherine Etchebest
2004 J jnl
Use of a structural alphabet for analysis of short loops connecting repetitive structures.
BMC Bioinform.
Laurent Fourrier, Cristina Benros, Alexandre G. de Brevern
2003 J jnl
'Hybrid Protein Model' for optimally defining 3D protein structure fragments.
Bioinform.
Alexandre G. de Brevern, Serge A. Hazout
2003 — conf
Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training.
NNSP
Cristina Benros, Alexandre G. de Brevern, Serge A. Hazout
2002 J jnl
Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres.
Comput. Chem.
Alexandre G. de Brevern, France Loirat, Anne Badel-Chagnon, Cécile André, Pierre Vincens, Serge A. Hazout
2000 C conf
Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties.
SPIRE
Alexandre G. de Brevern, Serge A. Hazout