Alexandra J. Golby

107 papers A 1Misc 1Journal 66Unranked 39

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Systematic Review on Data-Driven Brain Deformation Modeling for Image-Guided Neurosurgery. CoRR Tiago Assis, Colin Galvin, Joshua Pardillo Castillo, Nazim Haouchine, Marta Kersten-Oertel, Zeyu Gao, Mireia Crispin-Ortuzar, Stephen J. Price, Thomas Santarius, Yangming Ou, Sarah F. Frisken, Nuno C. Garcia, Alexandra J. Golby, Reuben Dorent, Inês Prata Machado
2026	J	`jnl`	Unified Cross-Modal Medical Image Synthesis With Hierarchical Mixture of Product-of-Experts. IEEE Trans. Pattern Anal. Mach. Intell. Reuben Dorent, Nazim Haouchine, Alexandra J. Golby, Sarah F. Frisken, Tina Kapur, William M. Wells III
2025	J	`jnl`	A Multimodal Deep Learning Approach for White Matter Shape Prediction in Diffusion MRI Tractography. CoRR Yui Lo, Yuqian Chen, Dongnan Liu, Leo R. Zekelman, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Fan Zhang, Tom Weidong Cai, Lauren J. O'Donnell
2025	J	`jnl`	Benchmarking NousNav: quantifying the spatial accuracy and clinical performance of an affordable, open-source neuronavigation system. Int. J. Comput. Assist. Radiol. Surg. Colton Barr, Colin Galvin, Parikshit Juvekar, Erickson Torio, Samantha Horvath, Samantha Sadler, Annie Li, Ryan S. Bardsley, Tina Kapur, Steve Pieper, Sonia Pujol, Sarah F. Frisken, Gabor Fichtinger, Alexandra J. Golby
2025	J	`jnl`	Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges. CoRR Lasse Hansen, Wiebke Heyer, Christoph Großbröhmer, Frederic Madesta, Thilo Sentker, Jiazheng Wang, Yuxi Zhang, Hang Zhang, Min Liu, Junyi Wang, Xi Zhu, Yuhua Li, Liwen Wang, Daniil Morozov, Nazim Haouchine, Joel Honkamaa, Pekka Marttinen, Yichao Zhou, Zuopeng Tan, Zhuoyuan Wang, Yi Wang, Hongchao Zhou, Shunbo Hu, Yi Zhang, Qian Tao, Lukas Förner, Thomas Wendler, Bailiang Jian, Christian Wachinger, Jin Kim, Dan Ruan, Marek Wodzinski, Henning Müller, Tony C. W. Mok, Xi Jia, Jinming Duan, Mikael Brudfors, Seyed-Ahmad Ahmadi, Yunzheng Zhu, William Hsu, Tina Kapur, William M. Wells, Alexandra J. Golby, Aaron Carass, Harrison X. Bai, Yihao Liu, Perrine Paul-Gilloteaux, Joakim Lindblad, Natasa Sladoje, Andreas Walter, Junyu Chen, Reuben Dorent, Alessa Hering, Mattias P. Heinrich
2025	J	`jnl`	Optimizing registration uncertainty visualization to support intraoperative decision-making during brain tumor resection. Int. J. Comput. Assist. Radiol. Surg. Mahsa Geshvadi, Reuben Dorent, Colin Galvin, Laura Rigolo, Nazim Haouchine, Tina Kapur, Steven D. Pieper, Mark G. Vangel, William M. Wells III, Alexandra J. Golby, Daniel Haehn, Sarah F. Frisken
2025	J	`jnl`	Spatiotemporally constrained 3D reconstruction from biplanar digital subtraction angiography. Int. J. Comput. Assist. Radiol. Surg. Sarah F. Frisken, Vivek Gopalakrishnan, David Dimitris Chlorogiannis, Nazim Haouchine, Alexandre Cafaro, Alexandra J. Golby, William M. Wells III, Rose Du
2025	J	`jnl`	The Brain Resection Multimodal Image Registration (ReMIND2Reg) 2025 Challenge. CoRR Reuben Dorent, Laura Rigolo, Colin Galvin, Junyu Chen, Mattias P. Heinrich, Aaron Carass, Olivier Colliot, Demian Wassermann, Alexandra J. Golby, Tina Kapur, William M. Wells III
2025	—	`conf`	TractShapeNet: Efficient Multi-Shape Learning with 3D Tractography Point Clouds. ISBI Yui Lo, Yuqian Chen, Dongnan Liu, Jon Haitz Legarreta, Leo R. Zekelman, Fan Zhang, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Tom Weidong Cai, Lauren J. O'Donnell
2025	J	`jnl`	When Experts Disagree: Characterizing Annotator Variability for Vessel Segmentation in DSA Images. CoRR Mahsa Geshvadi, G. So, David Dimitris Chlorogiannis, Colin Galvin, Erickson Torio, A. Azimi, Y. Tachie-Baffour, Nazim Haouchine, Alexandra J. Golby, Mark G. Vangel, William M. Wells III, Y. Epelboym, Rose Du, Funda Durupinar, Sarah F. Frisken
2024	—	`conf`	Cross-Domain Fiber Cluster Shape Analysis for Language Performance Cognitive Score Prediction. CDMRI@MICCAI Yui Lo, Yuqian Chen, Dongnan Liu, Wan Liu, Leo R. Zekelman, Fan Zhang, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
2024	J	`jnl`	Cross-domain Fiber Cluster Shape Analysis for Language Performance Cognitive Score Prediction. CoRR Yui Lo, Yuqian Chen, Dongnan Liu, Wan Liu, Leo R. Zekelman, Fan Zhang, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
2024	—	`conf`	Intraoperative Registration by Cross-Modal Inverse Neural Rendering. MICCAI (6) Maximilian Fehrentz, Mohammad Farid Azampour, Reuben Dorent, Hassan Rasheed, Colin Galvin, Alexandra J. Golby, William M. Wells III, Sarah F. Frisken, Nassir Navab, Nazim Haouchine
2024	J	`jnl`	Intraoperative Registration by Cross-Modal Inverse Neural Rendering. CoRR Maximilian Fehrentz, Mohammad Farid Azampour, Reuben Dorent, Hassan Rasheed, Colin Galvin, Alexandra J. Golby, William M. Wells III, Sarah F. Frisken, Nassir Navab, Nazim Haouchine
2024	—	`conf`	Learning to Match 2D Keypoints Across Preoperative MR and Intraoperative Ultrasound. ASMUS@MICCAI Hassan Rasheed, Reuben Dorent, Maximilian Fehrentz, Tina Kapur, William M. Wells III, Alexandra J. Golby, Sarah F. Frisken, Julia A. Schnabel, Nazim Haouchine
2024	J	`jnl`	Learning to Match 2D Keypoints Across Preoperative MR and Intraoperative Ultrasound. CoRR Hassan Rasheed, Reuben Dorent, Maximilian Fehrentz, Tina Kapur, William M. Wells III, Alexandra J. Golby, Sarah F. Frisken, Julia A. Schnabel, Nazim Haouchine
2024	J	`jnl`	Non-Invasive Blood-Brain Barrier Disruption Using Acoustic Holography With a Clinical Focused Ultrasound System. IEEE Trans. Biomed. Eng. Nathan McDannold, Yongzhi Zhang, Stecia-Marie P. Fletcher, Patrick Y. Wen, David A. Reardon, Alexandra J. Golby, Margaret S. Livingstone
2024	—	`conf`	Patient-Specific Real-Time Segmentation in Trackerless Brain Ultrasound. MICCAI (6) Reuben Dorent, Erickson Torio, Nazim Haouchine, Colin Galvin, Sarah F. Frisken, Alexandra J. Golby, Tina Kapur, William M. Wells III
2024	J	`jnl`	Patient-Specific Real-Time Segmentation in Trackerless Brain Ultrasound. CoRR Reuben Dorent, Erickson Torio, Nazim Haouchine, Colin Galvin, Sarah F. Frisken, Alexandra J. Golby, Tina Kapur, William M. Wells III
2024	J	`jnl`	Spatiotemporal Disentanglement of Arteriovenous Malformations in Digital Subtraction Angiography. CoRR Kathleen Baur, Xin Xiong, Erickson Torio, Rose Du, Parikshit Juvekar, Reuben Dorent, Alexandra J. Golby, Sarah F. Frisken, Nazim Haouchine
2024	J	`jnl`	The shape of the brain's connections is predictive of cognitive performance: an explainable machine learning study. CoRR Yui Lo, Yuqian Chen, Dongnan Liu, Wan Liu, Leo R. Zekelman, Jarrett Rushmore, Fan Zhang, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
2024	J	`jnl`	TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. Medical Image Anal. Yuqian Chen, Leo R. Zekelman, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
2024	J	`jnl`	TractShapeNet: Efficient Multi-Shape Learning with 3D Tractography Point Clouds. CoRR Yui Lo, Yuqian Chen, Dongnan Liu, Jon Haitz Legarreta, Leo R. Zekelman, Fan Zhang, Jarrett Rushmore, Yogesh Rathi, Nikos Makris, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
2024	J	`jnl`	Unified Cross-Modal Image Synthesis with Hierarchical Mixture of Product-of-Experts. CoRR Reuben Dorent, Nazim Haouchine, Alexandra J. Golby, Sarah F. Frisken, Tina Kapur, William M. Wells III
2024	J	`jnl`	VESCL: an open source 2D vessel contouring library. Int. J. Comput. Assist. Radiol. Surg. Sarah F. Frisken, Nazim Haouchine, David Dimitris Chlorogiannis, Vivek Gopalakrishnan, Alexandre Cafaro, William M. Wells III, Alexandra J. Golby, Rose Du
2023	J	`jnl`	A tool-free neuronavigation method based on single-view hand tracking. Comput. methods Biomech. Biomed. Eng. Imaging Vis. Fryderyk Victor Kögl, Étienne Léger, Nazim Haouchine, Erickson Torio, Parikshit Juvekar, Nassir Navab, Tina Kapur, Steve Pieper, Alexandra J. Golby, Sarah F. Frisken
2023	J	`jnl`	Comparison of physics-based deformable registration methods for image-guided neurosurgery. Frontiers Digit. Health Nikos Chrisochoides, Yixun Liu, Fotis Drakopoulos, Andriy Kot, Panagiotis A. Foteinos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Andrey Fedorov, Alexandra J. Golby, Peter M. Black, Ron Kikinis
2023	—	`conf`	DEEPRGVP: A novel microstructure-informed supervised contrastive learning framework for automated identification of the retinogeniculate pathway using dMRI tractography. ISBI Sipei Li, Jianzhong He, Tengfei Xue, Guoqiang Xie, Shun Yao, Yuqian Chen, Erickson F. Torio, Yuanjing Feng, Dhiego Chaves de Almeida Bastos, Yogesh Rathi, Nikos Makris, Ron Kikinis, Wenya Linda Bi, Alexandra J. Golby, Lauren J. O'Donnell, Fan Zhang
2023	J	`jnl`	Deep Learning for Detection and Localization of B-Lines in Lung Ultrasound. IEEE J. Biomed. Health Informatics Ruben T. Lucassen, Mohammad H. Jafari, Nicole M. Duggan, Nick Jowkar, Alireza Mehrtash, Chanel E. Fischetti, Denie Bernier, Kira Prentice, Erik P. Duhaime, Mike Jin, Purang Abolmaesumi, Friso G. Heslinga, Mitko Veta, Maria Alejandra Duran Mendicuti, Sarah F. Frisken, Paul B. Shyn, Alexandra J. Golby, Edward W. Boyer, William M. Wells III, Andrew J. Goldsmith, Tina Kapur
2023	J	`jnl`	Detection of idiopathic normal pressure hydrocephalus on head CT using a deep convolutional neural network. Neural Comput. Appl. Matthew A. Haber, Giorgio Pietro Biondetti, Romane Gauriau, Donnella S. Comeau, John K. Chin, Bernardo C. Bizzo, Julia Strout, Alexandra J. Golby, Katherine P. Andriole
2023	—	`conf`	Learning Expected Appearances for Intraoperative Registration During Neurosurgery. MICCAI (9) Nazim Haouchine, Reuben Dorent, Parikshit Juvekar, Erickson Torio, William M. Wells III, Tina Kapur, Alexandra J. Golby, Sarah F. Frisken
2023	J	`jnl`	Learning Expected Appearances for Intraoperative Registration during Neurosurgery. CoRR Nazim Haouchine, Reuben Dorent, Parikshit Juvekar, Erickson Torio, William M. Wells III, Tina Kapur, Alexandra J. Golby, Sarah F. Frisken
2023	J	`jnl`	Reconstructing the somatotopic organization of the corticospinal tract remains a challenge for modern tractography methods. CoRR Jianzhong He, Fan Zhang, Yiang Pan, Yuanjing Feng, Jarrett Rushmore, Erickson Torio, Yogesh Rathi, Nikos Makris, Ron Kikinis, Alexandra J. Golby, Lauren J. O'Donnell
2023	J	`jnl`	SlicerCBM: automatic framework for biomechanical analysis of the brain. Int. J. Comput. Assist. Radiol. Surg. Saima Safdar, Benjamin F. Zwick, Yue Yu, George C. Bourantas, Grand R. Joldes, Simon K. Warfield, Damon E. Hyde, Sarah F. Frisken, Tina Kapur, Ron Kikinis, Alexandra J. Golby, Arya Nabavi, Adam Wittek, Karol Miller
2023	J	`jnl`	Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions. Medical Image Anal. Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
2023	—	`conf`	TractCloud: Registration-Free Tractography Parcellation with a Novel Local-Global Streamline Point Cloud Representation. MICCAI (8) Tengfei Xue, Yuqian Chen, Chaoyi Zhang, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
2023	J	`jnl`	TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation. CoRR Tengfei Xue, Yuqian Chen, Chaoyi Zhang, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
2023	J	`jnl`	TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance. CoRR Yuqian Chen, Leo R. Zekelman, Chaoyi Zhang, Tengfei Xue, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Fan Zhang, Lauren J. O'Donnell
2023	—	`conf`	Unified Brain MR-Ultrasound Synthesis Using Multi-modal Hierarchical Representations. MICCAI (10) Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III
2023	J	`jnl`	Unified Brain MR-Ultrasound Synthesis using Multi-Modal Hierarchical Representations. CoRR Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III
2022	J	`jnl`	Automatic framework for patient-specific modelling of tumour resection-induced brain shift. Comput. Biol. Medicine Yue Yu, Saima Safdar, George C. Bourantas, Benjamin Zwick, Grand R. Joldes, Tina Kapur, Sarah F. Frisken, Ron Kikinis, Arya Nabavi, Alexandra J. Golby, Adam Wittek, Karol Miller
2022	J	`jnl`	DeepRGVP: A Novel Microstructure-Informed Supervised Contrastive Learning Framework for Automated Identification Of The Retinogeniculate Pathway Using dMRI Tractography. CoRR Sipei Li, Jianzhong He, Tengfei Xue, Guoqiang Xie, Shun Yao, Yuqian Chen, Erickson F. Torio, Yuanjing Feng, Dhiego Chaves de Almeida Bastos, Yogesh Rathi, Nikos Makris, Ron Kikinis, Wenya Linda Bi, Alexandra J. Golby, Lauren J. O'Donnell, Fan Zhang
2022	J	`jnl`	NousNav: A low-cost neuronavigation system for deployment in lower-resource settings. Int. J. Comput. Assist. Radiol. Surg. Étienne Léger, Samantha Horvath, Jean-Christophe Fillion-Robin, David Allemang, Samuel Gerber, Parikshit Juvekar, Erickson Torio, Tina Kapur, Steve Pieper, Sonia Pujol, Ryan S. Bardsley, Sarah F. Frisken, Alexandra J. Golby
2022	J	`jnl`	Pose Estimation and Non-Rigid Registration for Augmented Reality During Neurosurgery. IEEE Trans. Biomed. Eng. Nazim Haouchine, Parikshit Juvekar, Michael Nercessian, William M. Wells III, Alexandra J. Golby, Sarah F. Frisken
2022	J	`jnl`	Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions. CoRR Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J. Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J. O'Donnell
2022	J	`jnl`	Using temporal and structural data to reconstruct 3D cerebral vasculature from a pair of 2D digital subtraction angiography sequences. Comput. Medical Imaging Graph. Sarah F. Frisken, Nazim Haouchine, Rose Du, Alexandra J. Golby
2022	—	`conf`	White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. MICCAI (1) Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Weidong Cai, Lauren J. O'Donnell
2022	J	`jnl`	White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning. CoRR Yuqian Chen, Fan Zhang, Chaoyi Zhang, Tengfei Xue, Leo R. Zekelman, Jianzhong He, Yang Song, Nikos Makris, Yogesh Rathi, Alexandra J. Golby, Tom Weidong Cai, Lauren J. O'Donnell
2022	J	`jnl`	White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project. NeuroImage Leo R. Zekelman, Fan Zhang, Nikos Makris, Jianzhong He, Yuqian Chen, Tengfei Xue, Daniela Liera, Daniel L. Drane, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
2021	—	`conf`	Deep Cortical Vessel Segmentation Driven By Data Augmentation With Neural Image Analogy. ISBI Michael Nercessian, Nazim Haouchine, Parikshit Juvekar, Sarah F. Frisken, Alexandra J. Golby
2021	—	`conf`	Estimation of High Framerate Digital Subtraction Angiography Sequences at Low Radiation Dose. MICCAI (6) Nazim Haouchine, Parikshit Juvekar, Xin Xiong, Jie Luo, Tina Kapur, Rose Du, Alexandra J. Golby, Sarah F. Frisken
2021	—	`conf`	Mapping the progression of resection continuously during brain tumor surgery. Image-Guided Procedures Sarah F. Frisken, Parikshit Juvekar, Wenya Linda Bi, Alexandra J. Golby
2021	J	`jnl`	Predicted microscopic cortical brain images for optimal craniotomy positioning and visualisation. Comput. methods Biomech. Biomed. Eng. Imaging Vis. Nazim Haouchine, Parikshit Juvekar, Alexandra J. Golby, Sarah F. Frisken
2021	J	`jnl`	Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed M. Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K. Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Pérez, Catherine Lebel, Jess E. Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux
2021	J	`jnl`	Tractography methods and findings in brain tumors and traumatic brain injury. NeuroImage Fang-Cheng Yeh, Andrei Irimia, Dhiego Chaves de Almeida Bastos, Alexandra J. Golby
2020	J	`jnl`	A comparison of thin-plate spline deformation and finite element modeling to compensate for brain shift during tumor resection. Int. J. Comput. Assist. Radiol. Surg. Sarah F. Frisken, Ma Luo, Parikshit Juvekar, Adomas Bunevicius, Inês Machado, Prashin Unadkat, Melina M. Bertotti, Matthew Toews, William M. Wells III, Michael I. Miga, Alexandra J. Golby
2020	J	`jnl`	Adaptive Physics-Based Non-Rigid Registration for Immersive Image-Guided Neuronavigation Systems. Frontiers Digit. Health Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nicolas Foroglou, Andrey Fedorov, Sarah F. Frisken, Ron Kikinis, Alexandra J. Golby, Nikos Chrisochoides
2020	—	`conf`	Alignment of cortical vessels viewed through the surgical microscope with preoperative imaging to compensate for brain shift. Image-Guided Procedures Nazim Haouchine, Parikshit Juvekar, Alexandra J. Golby, William M. Wells III, Stephane Cotin, Sarah F. Frisken
2020	—	`conf`	Are Registration Uncertainty and Error Monotonically Associated? MICCAI (3) Jie Luo, Sarah F. Frisken, Duo Wang, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III
2020	—	`conf`	Automatic brain structure-guided registration of pre and intra-operative 3D ultrasound for neurosurgery. Image-Guided Procedures Soumya Ghose, David Mills, Jhimli Mitra, L. Scott Smith, Desmond Teck-Beng Yeo, Alexandra J. Golby, Sarah F. Frisken, Thomas K. Foo
2020	J	`jnl`	Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification. NeuroImage Fan Zhang, Guoqiang Xie, Laura Leung, Michael A. Mooney, Lorenz Epprecht, Isaiah Norton, Yogesh Rathi, Ron Kikinis, Ossama Al-Mefty, Nikos Makris, Alexandra J. Golby, Lauren J. O'Donnell
2020	J	`jnl`	Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation. Medical Image Anal. Fan Zhang, Suheyla Cetin Karayumak, Nico Hoffmann, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
2020	—	`conf`	Deformation Aware Augmented Reality for Craniotomy Using 3D/2D Non-rigid Registration of Cortical Vessels. MICCAI (4) Nazim Haouchine, Parikshit Juvekar, William M. Wells III, Stephane Cotin, Alexandra J. Golby, Sarah F. Frisken
2020	J	`jnl`	Do Public Datasets Assure Unbiased Comparisons for Registration Evaluation? CoRR Jie Luo, Guangshen Ma, Sarah F. Frisken, Parikshit Juvekar, Nazim Haouchine, Zhe Xu, Yiming Xiao, Alexandra J. Golby, Patrick J. Codd, Masashi Sugiyama, William M. Wells III
2019	—	`conf`	A comprehensive model-assisted brain shift correction approach in image-guided neurosurgery: a case study in brain swelling and subsequent sag after craniotomy. Image-Guided Procedures Ma Luo, Sarah F. Frisken, Saramati Narasimhan, Logan W. Clements, Reid Carleton Thompson, Alexandra J. Golby, Michael I. Miga
2019	—	`conf`	Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions. MICCAI (3) Fan Zhang, Nico Hoffmann, Suheyla Cetin Karayumak, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
2019	J	`jnl`	Deformable MRI-Ultrasound registration using correlation-based attribute matching for brain shift correction: Accuracy and generality in multi-site data. NeuroImage Inês Machado, Matthew Toews, Elizabeth George, Prashin Unadkat, Walid Essayed, Jie Luo, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah F. Frisken, Alexandra J. Golby, William M. Wells III, Yangming Ou
2019	—	`conf`	On the Applicability of Registration Uncertainty. MICCAI (2) Jie Luo, Alireza Sedghi, Karteek Popuri, Dana Cobzas, Miaomiao Zhang, Frank Preiswerk, Matthew Toews, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III, Sarah F. Frisken
2019	J	`jnl`	Pilot Study on Verifying the Monotonic Relationship between Error and Uncertainty in Deformable Registration for Neurosurgery. CoRR Jie Luo, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III, Sarah F. Frisken
2019	—	`conf`	Preliminary results comparing thin-plate splines with finite element methods for modeling brain deformation during neurosurgery using intraoperative ultrasound. Image-Guided Procedures Sarah F. Frisken, Ma Luo, Inês Machado, Prashin Unadkat, Parikshit Juvekar, Adomas Bunevicius, Matthew Toews, William M. Wells III, Michael I. Miga, Alexandra J. Golby
2018	—	`conf`	A Feature-Driven Active Framework for Ultrasound-Based Brain Shift Compensation. MICCAI (4) Jie Luo, Matthew Toews, Inês Machado, Sarah F. Frisken, Miaomiao Zhang, Frank Preiswerk, Alireza Sedghi, Hongyi Ding, Steve Pieper, Polina Golland, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III
2018	J	`jnl`	A Feature-Driven Active Framework for Ultrasound-Based Brain Shift Compensation. CoRR Jie Luo, Matthew Toews, Inês Machado, Sarah F. Frisken, Miaomiao Zhang, Frank Preiswerk, Alireza Sedghi, Hongyi Ding, Steve Pieper, Polina Golland, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III
2018	—	`conf`	Deformable MRI-Ultrasound Registration via Attribute Matching and Mutual-Saliency Weighting for Image-Guided Neurosurgery. POCUS/BIVPCS/CuRIOUS/CPM@MICCAI Inês Machado, Matthew Toews, Jie Luo, Prashin Unadkat, Walid Essayed, Elizabeth George, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah F. Frisken, Alexandra J. Golby, William M. Wells III, Yangming Ou
2018	J	`jnl`	Non-rigid registration of 3D ultrasound for neurosurgery using automatic feature detection and matching. Int. J. Comput. Assist. Radiol. Surg. Inês Machado, Matthew Toews, Jie Luo, Prashin Unadkat, Walid Essayed, Elizabeth George, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah F. Frisken, Alexandra J. Golby, William M. Wells III
2018	J	`jnl`	On the Ambiguity of Registration Uncertainty. CoRR Jie Luo, Sarah F. Frisken, Karteek Popuri, Dana Cobzas, Frank Preiswerk, Matthew Toews, Miaomiao Zhang, Hongyi Ding, Polina Golland, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III
2018	J	`jnl`	Using the variogram for vector outlier screening: application to feature-based image registration. Int. J. Comput. Assist. Radiol. Surg. Jie Luo, Sarah F. Frisken, Inês Machado, Miaomiao Zhang, Steve Pieper, Polina Golland, Matthew Toews, Prashin Unadkat, Alireza Sedghi, Haoyin Zhou, Alireza Mehrtash, Frank Preiswerk, Cheng-Chieh Cheng, Alexandra J. Golby, Masashi Sugiyama, William M. Wells III
2017	—	`conf`	Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction. ISBI Fan Zhang, Pegah Kahali, Yannick Suter, Isaiah Norton, Laura Rigolo, Peter Savadjiev, Yang Song, Yogesh Rathi, Tom Weidong Cai, William M. Wells III, Alexandra J. Golby, Lauren J. O'Donnell
2017	—	`conf`	Validation of model-based brain shift correction in neurosurgery via intraoperative magnetic resonance imaging: preliminary results. Image-Guided Procedures Ma Luo, Sarah F. Frisken, Jared A. Weis, Logan W. Clements, Prashin Unadkat, Reid Carleton Thompson, Alexandra J. Golby, Michael I. Miga
2016	J	`jnl`	Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. Int. J. Comput. Assist. Radiol. Surg. Zhenrui Chen, Yanmei Tie, Olutayo I. Olubiyi, Fan Zhang, Alireza Mehrtash, Laura Rigolo, Pegah Kahali, Isaiah Norton, Ofer Pasternak, Yogesh Rathi, Alexandra J. Golby, Lauren J. O'Donnell
2014	J	`jnl`	Decoupling function and anatomy in atlases of functional connectivity patterns: Language mapping in tumor patients. NeuroImage Georg Langs, Andrew Sweet, Danial Lashkari, Yanmei Tie, Laura Rigolo, Alexandra J. Golby, Polina Golland
2013	J	`jnl`	Bayesian characterization of uncertainty in intra-subject non-rigid registration. Medical Image Anal. Petter Risholm, Firdaus Janoos, Isaiah Norton, Alexandra J. Golby, William M. Wells III
2013	J	`jnl`	Fiber clustering versus the parcellation-based connectome. NeuroImage Lauren J. O'Donnell, Alexandra J. Golby, Carl-Fredrik Westin
2013	J	`jnl`	GBM Volumetry using the 3D Slicer Medical Image Computing Platform CoRR Jan Egger, Tina Kapur, Andriy Fedorov, Steve Pieper, James V. Miller, Harini Veeraraghavan, Bernd Freisleben, Alexandra J. Golby, Christopher Nimsky, Ron Kikinis
2013	—	`conf`	Inter-slice Correspondence for 2D Ultrasound-Guided Procedures. CLIP Matthew Toews, Alexandra J. Golby, William M. Wells III
2012	—	`conf`	Unbiased Groupwise Registration of White Matter Tractography. MICCAI (3) Lauren J. O'Donnell, William M. Wells III, Alexandra J. Golby, Carl-Fredrik Westin
2012	J	`jnl`	fMRI-DTI modeling via landmark distance atlases for prediction and detection of fiber tracts. NeuroImage Lauren J. O'Donnell, Laura Rigolo, Isaiah Norton, William M. Wells III, Carl-Fredrik Westin, Alexandra J. Golby
2011	—	`conf`	Learning an Atlas of a Cognitive Process in Its Functional Geometry. IPMI Georg Langs, Danial Lashkari, Andrew Sweet, Yanmei Tie, Laura Rigolo, Alexandra J. Golby, Polina Golland
2010	J	`jnl`	Current dipole orientation and distribution of epileptiform activity correlates with cortical thinning in left mesiotemporal epilepsy. NeuroImage Claus Reinsberger, Naoaki Tanaka, Andrew J. Cole, Jong Woo Lee, Barbara A. Dworetzky, Edward Bromfield, Lorie Hamiwka, Blaise F. Bourgeois, Alexandra J. Golby, Joseph R. Madsen, Steven M. Stufflebeam
2010	—	`conf`	Functional Geometry Alignment and Localization of Brain Areas. NIPS Georg Langs, Yanmei Tie, Laura Rigolo, Alexandra J. Golby, Polina Golland
2010	—	`conf`	The Fiber Laterality Histogram: A New Way to Measure White Matter Asymmetry. MICCAI (2) Lauren J. O'Donnell, Carl-Fredrik Westin, Isaiah Norton, Stephen Whalen, Laura Rigolo, Ruth E. Propper, Alexandra J. Golby
2009	J	`jnl`	Tract-based morphometry for white matter group analysis. NeuroImage Lauren J. O'Donnell, Carl-Fredrik Westin, Alexandra J. Golby
2008	—	`conf`	Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. ISBI Julien Dauguet, Simon K. Warfield, Edward Bromfield, Alexandra J. Golby, Jong Woo Lee
2008	—	`conf`	Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging. MICCAI (2) Clare B. Poynton, Mark Jenkinson, Stephen Whalen, Alexandra J. Golby, William M. Wells III
2008	J	`jnl`	Group independent component analysis of language fMRI from word generation tasks. NeuroImage Yanmei Tie, Stephen Whalen, Ralph O. Suarez, Alexandra J. Golby
2008	—	`conf`	Two-tensor streamline tractography through white matter intra-voxel fiber crossings: Assessed by fMRI. CVPR Workshops Arish A. Qazi, Gordon L. Kindlmann, Lauren O'Donnell, Sharon Peled, Alireza Radmanesh, Stephen Whalen, Alexandra J. Golby, Carl-Fredrik Westin
2007	Misc	`conf`	Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. International Conference on Computational Science (1) Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Daniel Goldberg-Zimring, Daniel F. Kacher, Stephen Whalen, Ron Kikinis, Ferenc A. Jolesz, Olivier Clatz, Simon K. Warfield, Peter M. Black, Alexandra J. Golby
2007	J	`jnl`	Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. NeuroImage Neculai Archip, Olivier Clatz, Stephen Whalen, Daniel F. Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc A. Jolesz, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
2007	—	`conf`	Tract-Based Morphometry. MICCAI (2) Lauren O'Donnell, Carl-Fredrik Westin, Alexandra J. Golby
2006	J	`jnl`	Functional MRI of memory in the hippocampus: Laterality indices may be more meaningful if calculated from whole voxel distributions. NeuroImage Daniel M. Branco, Ralph O. Suarez, Stephen Whalen, James P. O'Shea, Aaron P. Nelson, Jaderson C. da Costa, Alexandra J. Golby
2006	A	`conf`	Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. SC Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter M. Black, Olivier Clatz, Alexandra J. Golby, Ron Kikinis, Simon K. Warfield
2006	—	`conf`	Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery. Image-Guided Procedures Neculai Archip, Andriy Fedorov, Bryn Lloyd, Nikos Chrisochoides, Alexandra J. Golby, Peter M. Black, Simon K. Warfield
2006	—	`conf`	Using surface normals to localize subdural intracranial electrodes placed during neurosurgery. ISBI James P. O'Shea, William M. Wells III, Alexandra J. Golby
2005	J	`jnl`	Capturing intraoperative deformations: research experience at Brigham and Women's hospital. Medical Image Anal. Simon K. Warfield, Steven Haker, Ion-Florin Talos, Corey Kemper, Neil I. Weisenfeld, Andrea J. U. Mewes, Daniel Goldberg-Zimring, Kelly H. Zou, Carl-Fredrik Westin, William M. Wells III, Clare M. Tempany, Alexandra J. Golby, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis
2005	—	`conf`	Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. MICCAI (2) Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield
2005	J	`jnl`	Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans. Medical Imaging Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield
2004	—	`conf`	An Anisotropic Material Model for Image Guided Neurosurgery. MICCAI (2) Corey Kemper, Ion-Florin Talos, Alexandra J. Golby, Peter M. Black, Ron Kikinis, W. Eric L. Grimson, Simon K. Warfield
2003	—	`conf`	Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI (1) Ion-Florin Talos, Lauren O'Donnell, Carl-Fredrik Westin, Simon K. Warfield, William M. Wells III, Seung-Schik Yoo, Lawrence P. Panych, Alexandra J. Golby, Hatsuho Mamata, Stefan S. Maier, Peter Ratiu, Charles R. G. Guttmann, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis