Alexandra Badea

26 papers B 2Journal 22Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Skull stripping with purely synthetic data. CoRR Jong Sung Park, Juhyung Ha, Siddhesh P. Thakur, Alexandra Badea, Spyridon Bakas, Eleftherios Garyfallidis
2024	J	`jnl`	Discovering the signal subgraph: An iterative screening approach on graphs. Pattern Recognit. Lett. Cencheng Shen, Shangsi Wang, Alexandra Badea, Carey E. Priebe, Joshua T. Vogelstein
2023	J	`jnl`	Learning sources of variability from high-dimensional observational studies. CoRR Eric W. Bridgeford, Jaewon Chung, Brian Gilbert, Sambit Panda, Adam Li, Cencheng Shen, Alexandra Badea, Brian Caffo, Joshua T. Vogelstein
2022	—	`conf`	Anatomical and functional cardiac PCCT imaging pipeline for characterization of Apolipoprotein E mouse models. Biomedical Applications in Molecular, Structural, and Functional Imaging Alex J. Allphin, Darin P. Clark, Alexandra Badea, Cristian T. Badea
2020	—	`conf`	MRI-based radiomics of sarcomas in the preclinical arm of a co-clinical trial. Biomedical Applications in Molecular, Structural, and Functional Imaging Matthew D. Holbrook, Stephanie J. Blocker, Yvonne M. Mowery, Alexandra Badea, Yi Qi, David G. Kirsch, Cristian T. Badea
2019	J	`jnl`	Connectome Smoothing via Low-Rank Approximations. IEEE Trans. Medical Imaging Runze Tang, Michael D. Ketcha, Alexandra Badea, Evan D. Calabrese, Daniel S. Margulies, Joshua T. Vogelstein, Carey E. Priebe, Daniel L. Sussman
2019	J	`jnl`	Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. Frontiers Neuroinformatics Alexandra Badea, Wenlin Wu, Jordan Shuff, Michele Wang, Robert J. Anderson, Yi Qi, G. Allan Johnson, Joan G. Wilson, Serge Koudoro, Eleftherios Garyfallidis, Carol A. Colton, David B. Dunson
2019	J	`jnl`	Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
2017	J	`jnl`	An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). CoRR Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
2016	B	`conf`	Image-processing pipelines: applications in magnetic resonance histology. Image Processing G. Allan Johnson, Robert J. Anderson, James J. Cook, Christopher Long, Alexandra Badea
2016	J	`jnl`	The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease. NeuroImage Alexandra Badea, Lauren Kane, Robert J. Anderson, Yi Qi, Mark Foster, Gary P. Cofer, Neil Medvitz, Anne F. Buckley, Andreas K. Badea, William C. Wetsel, Carol A. Colton
2015	J	`jnl`	A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. NeuroImage Evan Calabrese, Alexandra Badea, Christopher L. Coe, Gabriele R. Lubach, Yundi Shi, Martin Andreas Styner, G. Allan Johnson
2013	J	`jnl`	A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. NeuroImage Evan Calabrese, Alexandra Badea, Charles Watson, G. Allan Johnson
2013	B	`conf`	Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Image Processing Darin P. Clark, Alexandra Badea, G. Allan Johnson, Cristian T. Badea
2012	J	`jnl`	A multidimensional magnetic resonance histology atlas of the Wistar rat brain. NeuroImage G. Allan Johnson, Evan Calabrese, Alexandra Badea, George Paxinos, Charles Watson
2012	J	`jnl`	A prior feature SVM-MRF based method for mouse brain segmentation. NeuroImage Teresa Wu, Min Hyeok Bae, Min Zhang, Rong Pan, Alexandra Badea
2012	J	`jnl`	Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage Alexandra Badea, Sally L. Gewalt, Brian B. Avants, James J. Cook, G. Allan Johnson
2010	J	`jnl`	Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. NeuroImage Alexandra Badea, G. Allan Johnson, Joanna L. Jankowsky
2010	J	`jnl`	Waxholm Space: An image-based reference for coordinating mouse brain research. NeuroImage G. Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Song Liu, Jonathan Nissanov
2009	J	`jnl`	Automated segmentation of mouse brain images using extended MRF. NeuroImage Min Hyeok Bae, Rong Pan, Teresa Wu, Alexandra Badea
2009	J	`jnl`	Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. NeuroImage Alexandra Badea, G. Allan Johnson, Robert W. Williams
2008	J	`jnl`	Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. NeuroImage Anjum A. Sharief, Alexandra Badea, Anders M. Dale, G. Allan Johnson
2007	J	`jnl`	High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. NeuroImage G. Allan Johnson, Anjum Ali-Sharief, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Sally L. Gewalt, Laurence W. Hedlund, Lucy Upchurch
2007	J	`jnl`	Morphometric analysis of the C57BL/6J mouse brain. NeuroImage Alexandra Badea, A. A. Ali-Sharief, G. Allan Johnson
2007	J	`jnl`	Neuroanatomical phenotypes in the Reeler mouse. NeuroImage Alexandra Badea, Peter Nicholls, G. Allan Johnson, William C. Wetsel
2005	J	`jnl`	Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. NeuroImage Anjum A. Sharief, Anders M. Dale, Alexandra Badea, G. Allan Johnson