Alexander Zelikovsky

203 papers A* 3A 13B 15C 13Misc 8Journal 82Unranked 52
YearRankTypeTitle / Venue / Authors
2026 — ed.
Computational Advances in Bio and Medical Sciences - 13th International Conference, ICCABS 2025, Atlanta, GA, USA, January 12-14, 2025, Revised Selected Papers
ICCABS
Mohammed Alser, Mukul S. Bansal, Yury Khudyakov, Serghei Mangul, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Shibu Yooseph, Alexander Zelikovsky
2026 J jnl
FASTR: Reimagining FASTQ via Compact Image-inspired Representation.
CoRR
Adrian Tkachenko, Sepehr Salem, Ayotomiwa Ezekiel Adeniyi, Zülal Bingöl, Mohammed Nayeem Uddin, Akshat Prasanna, Alexander Zelikovsky, Serghei Mangul, Can Alkan, Mohammed Alser
2025 — conf
Applying Genetic Algorithm with Saltations to MAX-3SAT.
ICCABS
Ryan Alomair, Hafsa Farooq, Daniel Novikov, Akshay Juyal, Alexander Zelikovsky
2025 — ed.
Computational Advances in Bio and Medical Sciences - 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11-13, 2023, Revised Selected Papers
ICCABS
Mukul S. Bansal, Wei Chen, Yury Khudyakov, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Sharma V. Thankachan, Alexander Zelikovsky
2025 — conf
Epistatic Density of Viral Variants in Acute and Chronic HCV Patients.
ICCABS
Alina Nemira, Akshay Juyal, Pavel Skums, Alexander Zelikovsky
2025 J jnl
Estimating Enzyme Expression and Metabolic Pathway Activity in
J. Comput. Biol.
Filipp Rondel, Hafsa Farooq, Roya Hosseini, Akshay Juyal, Sergey Knyazev, Serghei Mangul, Artem S. Rogovskyy, Alexander Zelikovsky
2025 J jnl
Guest Editorial Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE Trans. Comput. Biol. Bioinform.
Zhipeng Cai, Alexander Zelikovsky
2025 J jnl
Guest Editorial: Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE Trans. Comput. Biol. Bioinform.
Wei Peng, Zhipeng Cai, Alexander Zelikovsky
2024 B conf
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes.
RECOMB
Fatemeh Mohebbi, Alexander Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums
2024 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhipeng Cai, Alexander Zelikovsky
2023 — ed.
Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9-12, 2023, Proceedings
ISBRA
Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky
2023 J jnl
Efficient Approximate Kernel Based Spike Sequence Classification.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson
2023 — conf
Genetic Algorithm with Evolutionary Jumps.
ISBRA
Hafsa Farooq, Daniel Novikov, Akshay Juyal, Alexander Zelikovsky
2023 — conf
Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines.
ICCABS
Akshay Juyal, Zahra Tayebi, Alexander Zelikovsky, Mauricio Soto Gomez, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
2023 — conf
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs.
ISBRA
Zahra Tayebi, Akshay Juyal, Alexander Zelikovsky, Murray Patterson
2023 J jnl
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol.
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2022 J jnl
17th International Symposium on Bioinformatics Research and Applications (ISBRA 2021).
J. Comput. Biol.
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
2022 — ed.
Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers
ICCABS
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2022 J jnl
Efficient Approximate Kernel Based Spike Sequence Classification.
CoRR
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson
2021 — conf
An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer.
ICCABS
Bikram Sahoo, Seth Sims, Alexander Zelikovsky
2021 J jnl
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.
Briefings Bioinform.
Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky
2021 J jnl
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
J. Comput. Biol.
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
2021 J jnl
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
J. Comput. Biol.
Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2021 J jnl
Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020).
J. Comput. Biol.
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky
2021 J jnl
Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020).
J. Comput. Biol.
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky
2021 J jnl
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
J. Comput. Biol.
Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2020 — ed.
Computational Advances in Bio and Medical Sciences - 9th International Conference, ICCABS 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers
ICCABS
Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2020 J jnl
Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019).
J. Comput. Biol.
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
2019 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2019 J jnl
Preface: 14th International Symposium on Bioinformatics Research and Applications (ISBRA 2018).
J. Comput. Biol.
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
2019 — conf
Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 — conf
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 J jnl
Automated quality control for a molecular surveillance system.
BMC Bioinform.
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
2018 C ed.
Combinatorial Optimization and Applications - 12th International Conference, COCOA 2018, Atlanta, GA, USA, December 15-17, 2018, Proceedings
COCOA
Donghyun Kim, R. N. Uma, Alexander Zelikovsky
2018 — ch.
Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Handbook of Approximation Algorithms and Metaheuristics (1)
Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2018 — ch.
QoS Multimedia Multicast Routing.
Handbook of Approximation Algorithms and Metaheuristics (2)
Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky
2017 — conf
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2017 — conf
Classification of HCV infections through sequence image normalization.
ICCABS
Sunitha Basodi, Pelin Burcak Icer, Pavel Skums, Yury Khudyakov, Alexander Zelikovsky, Yi Pan
2017 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Robert W. Harrison, Ion I. Mandoiu, Alexander Zelikovsky
2016 J jnl
Computing and Combinatorics.
Algorithmica
Zhipeng Cai, Alexander Zelikovsky
2016 J jnl
Special issue on Computing and Combinatorics Conference.
Theor. Comput. Sci.
Zhipeng Cai, Alexander Zelikovsky
2015 — conf
GaussianCpG: A Gaussian model for detection of human CpG island.
ICCABS
Ning Yu, Xuan Guo, Alexander Zelikovsky, Yi Pan
2014 J jnl
ILP-based maximum likelihood genome scaffolding.
BMC Bioinform.
James Lindsay, Hamed Salooti, Ion I. Mandoiu, Alexander Zelikovsky
2013 J jnl
Distributed Algorithms for TDMA Link Scheduling in Sensor Networks.
Int. J. Netw. Comput.
Thamer Alsulaiman, Sushil K. Prasad, Alexander Zelikovsky
2013 J jnl
Guest Editors' introduction to the special section on bioinformatics research and applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Jianxin Wang, Alexander Zelikovsky
2012 — conf
Distributed Algorithms for TDMA Link Scheduling in Sensor Networks.
IPDPS Workshops
Thamer Alsulaiman, Sushil K. Prasad, Alexander Zelikovsky
2012 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jianer Chen, Alexander Zelikovsky
2012 J jnl
Guest Editors' Introduction.
BMC Bioinform.
Jianer Chen, Ion I. Mandoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky
2012 J jnl
Maximum Series-Parallel Subgraph.
Algorithmica
Gruia Calinescu, Cristina G. Fernandes, Hemanshu Kaul, Alexander Zelikovsky
2012 — conf
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming.
ICCABS
James Lindsay, Ion I. Mandoiu, Hamed Salooti, Alexander Zelikovsky
2012 — conf
Scalable genome scaffolding using integer linear programming.
BCB
James Lindsay, Hamed Salooti, Alexander Zelikovsky, Ion I. Mandoiu
2012 — conf
Workshop: A maximum likelihood method for quasispecies spectrum assembly.
ICCABS
Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky
2012 — conf
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data.
ICCABS
Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky
2012 — conf
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
ICCABS
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
2011 — ed.
Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings
ISBRA
Jianer Chen, Jianxin Wang, Alexander Zelikovsky
2011 J jnl
Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications.
Int. J. Knowl. Discov. Bioinform.
Qiong Cheng, Alexander Zelikovsky
2011 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky
2011 — conf
Invited: Metabolic network alignments.
ICCABS
Alexander Zelikovsky
2011 C conf
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data.
WABI
Serghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky
2011 J jnl
Optimal Testing of Digital Microfluidic Biochips.
INFORMS J. Comput.
Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Poster: Haplotype discovery from high-throughput sequencing data.
ICCABS
Serghei Mangul, Alexander Zelikovsky
2011 — conf
Poster: Scaffolding draft genomes using paired sequencing data.
ICCABS
James Lindsay, J. Zhang, T. Farnham, Y. Wu, Ion I. Mandoiu, Rachel J. O'Neill, Hamed Salooti, E. Bullwinkel, Alexander Zelikovsky
2011 — conf
Poster: ViSpA: Viral spectrum assembling method.
ICCABS
Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alexander Zelikovsky
2011 — conf
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
BIBM Workshops
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads.
BIBM Workshops
Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu, Alexander Zelikovsky
2010 — conf
A 3/2-Approximation Algorithm for Generalized Steiner Trees in Complete Graphs with Edge Lengths 1 and 2.
ISAAC (1)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
2010 — conf
Efficient Alignments of Metabolic Networks with Bounded Treewidth.
ICDM Workshops
Qiong Cheng, Piotr Berman, Robert W. Harrison, Alexander Zelikovsky
2010 C conf
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data.
WABI
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky
2010 — conf
Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments.
ICDM Workshops
Qiong Cheng, Jinpeng Wei, Alexander Zelikovsky, Mitsunori Ogihara
2010 A conf
WS-GraphMatching: a web service tool for graph matching.
CIKM
Qiong Cheng, Mitsunori Ogihara, Jinpeng Wei, Alexander Zelikovsky
2009 B conf
1.25-Approximation Algorithm for Steiner Tree Problem with Distances 1 and 2.
WADS
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
2009 — ch.
Bottleneck Steiner Tree Problems.
Encyclopedia of Optimization
Alexander Zelikovsky
2009 — conf
Genotype Tagging with Limited Overfitting.
BSB
Irina Astrovskaya, Alexander Zelikovsky
2009 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky
2009 — conf
Mean Square Residue Biclustering with Missing Data and Row Inversions.
ISBRA
Stefan Gremalschi, Gulsah Altun, Irina Astrovskaya, Alexander Zelikovsky
2009 J jnl
MetNetAligner: a web service tool for metabolic network alignments.
Bioinform.
Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky
2008 J jnl
1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two
CoRR
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
2008 J jnl
1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two.
Electron. Colloquium Comput. Complex.
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
2008 J jnl
2SNP: Scalable Phasing Method for Trios and Unrelated Individuals.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dumitru Brinza, Alexander Zelikovsky
2008 J jnl
A Factor 3/2 Approximation for Generalized Steiner Tree Problem with Distances One and Two
CoRR
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
2008 — ed.
Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings
ISBRA
Ion I. Mandoiu, Raj Sunderraman, Alexander Zelikovsky
2008 J jnl
Design and Validation of Methods Searching for Risk Factors in Genotype Case-Control Studies.
J. Comput. Biol.
Dumitru Brinza, Alexander Zelikovsky
2008 — conf
Fast Alignments of Metabolic Networks.
BIBM
Qiong Cheng, Piotr Berman, Robert W. Harrison, Alexander Zelikovsky
2008 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
2008 — conf
HCV Quasispecies Assembly Using Network Flows.
ISBRA
Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky
2008 — ch.
Minimum Steiner Tree Construction.
Handbook of Algorithms for Physical Design Automation
Gabriel Robins, Alexander Zelikovsky
2007 C conf
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.
WABI
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
2007 J jnl
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.
J. Comput. Biol.
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
2007 — ed.
Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings
ISBRA
Ion I. Mandoiu, Alexander Zelikovsky
2007 J jnl
Bright-Field AAPSM Conflict Detection and Correction
CoRR
Charles C. Chiang, Andrew B. Kahng, Subarna Sinha, Xu Xu, Alexander Zelikovsky
2007 C conf
Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies.
BIBE
Dumitru Brinza, Alexander Zelikovsky
2007 J jnl
Energy Efficient Node Caching and Load Balancing Enhancement of Reactive Ad Hoc Routing Protocols.
J. Univers. Comput. Sci.
Nisar Hundewale, Sunsook Jung, Alexander Zelikovsky
2007 J jnl
Enhanced Design Flow and Optimizations for Multiproject Wafers.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Ion I. Mandoiu, Xu Xu, Alexander Zelikovsky
2007 J jnl
Fast and Efficient Bright-Field AAPSM Conflict Detection and Correction.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Charles C. Chiang, Andrew B. Kahng, Subarna Sinha, Xu Xu, Alexander Zelikovsky
2007 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
2007 C conf
Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways.
BIBE
Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky
2007 — ch.
Multicommodity Flow Algorithms for Buffered Global Routing.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Andrew B. Kahng, Christoph Albrecht, Alexander Zelikovsky
2007 — ch.
Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Andrew B. Kahng, Alexander Zelikovsky
2007 — ch.
QoS Multimedia Multicast Routing.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky
2007 — conf
Risk Factor Searching Heuristics for SNP Case-Control Studies.
BIBM
Dumitru Brinza, Alexander Zelikovsky
2007 J jnl
Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks.
J. Univers. Comput. Sci.
Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky, Marius Zimand
2006 J jnl
2SNP: scalable phasing based on 2-SNP haplotypes.
Bioinform.
Dumitru Brinza, Alexander Zelikovsky
2006 Misc conf
Applications of the Linear Matroid Parity Algorithm to Approximating Steiner Trees.
CSR
Piotr Berman, Martin Fürer, Alexander Zelikovsky
2006 C conf
Combinatorial Methods for Disease Association Search and Susceptibility Prediction.
WABI
Dumitru Brinza, Alexander Zelikovsky
2006 — conf
Combinatorial Search Methods for Multi-SNP Disease Association.
EMBC
Dumitru Brinza, Jingwu He, Alexander Zelikovsky
2006 J jnl
Computer-Aided Optimization of DNA Array Design and Manufacturing.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2006 C conf
DEEPS: Deterministic Energy-Efficient Protocol for Sensor networks.
SNPD
Dumitru Brinza, Alexander Zelikovsky
2006 A conf
Fill for shallow trench isolation CMP.
ICCAD
Andrew B. Kahng, Puneet Sharma, Alexander Zelikovsky
2006 Misc conf
Genotype susceptibility and integrated risk factors for complex diseases.
GrC
Weidong Mao, Dumitru Brinza, Nisar Hundewale, Stefan Gremalschi, Alexander Zelikovsky
2006 Misc conf
Haplotype tagging using support vector machines.
GrC
Jingwu He, Jun Zhang, Gulsah Altun, Alexander Zelikovsky, Yanqing Zhang
2006 Misc conf
Hybrid SVM Kernels for Protein Secondary Structure Prediction.
GrC
Gulsah Altun, Hae-Jin Hu, Dumitru Brinza, Robert W. Harrison, Alexander Zelikovsky, Yi Pan
2006 J jnl
MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression.
Bioinform.
Jingwu He, Alexander Zelikovsky
2006 C conf
Maximum Lifetime of Sensor Networks with Adjustable Sensing Range.
SNPD
Akshaye Dhawan, Chinh T. Vu, Alexander Zelikovsky, Yingshu Li, Sushil K. Prasad
2006 Misc conf
Phasing of 2-SNP Genotypes Based on Non-random Mating Model.
International Conference on Computational Science (2)
Dumitru Brinza, Alexander Zelikovsky
2006 J jnl
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks.
Wirel. Networks
Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky
2006 — ch.
Routing Using Messengers in Sparse and Disconnected Mobile Sensor Networks.
Advances in Web Intelligence and Data Mining
Qiong Cheng, Yanqing Zhang, Xiaolin Hu, Nisar Hundewale, Alexander Zelikovsky
2006 Misc conf
Tag SNP Selection Based on Multivariate Linear Regression.
International Conference on Computational Science (2)
Jingwu He, Alexander Zelikovsky
2005 A conf
Bright-Field AAPSM Conflict Detection and Correction.
DATE
Charles C. Chiang, Andrew B. Kahng, Subarna Sinha, Xu Xu, Alexander Zelikovsky
2005 J jnl
Compressible area fill synthesis.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky, Yuhong Zheng
2005 B conf
Energy-efficient continuous and event-driven monitoring.
MASS
Dumitru Brinza, Gruia Calinescu, Sutep Tongngam, Alexander Zelikovsky
2005 J jnl
Family trio phasing and missing data recovery.
Int. J. Bioinform. Res. Appl.
Dumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky
2005 C conf
GKM over large MANET.
SNPD
Sunsook Jung, Nisar Hundewale, Alexander Zelikovsky
2005 J jnl
Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem.
Algorithmica
Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky
2005 J jnl
Linear reduction method for predictive and informative tag SNP selection.
Int. J. Bioinform. Res. Appl.
Jingwu He, Kelly Westbrooks, Alexander Zelikovsky
2005 J jnl
Multicommodity Flow Algorithms for Buffered Global Routing
CoRR
Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2005 Misc conf
Phasing and Missing Data Recovery in Family Trios.
International Conference on Computational Science (2)
Dumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky
2005 J jnl
The Polymatroid Steiner Problems.
J. Comb. Optim.
Gruia Calinescu, Alexander Zelikovsky
2005 J jnl
Tighter Bounds for Graph Steiner Tree Approximation.
SIAM J. Discret. Math.
Gabriel Robins, Alexander Zelikovsky
2005 — ed.
Transactions on Computational Systems Biology II
Trans. Computational Systems Biology
Corrado Priami, Alexander Zelikovsky
2004 — conf
Evaluation of the new OASIS format for layout fill compression.
ICECS
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky, Yuhong Zheng
2004 C conf
Linear Reduction for Haplotype Inference.
WABI
Jingwu He, Alexander Zelikovsky
2004 — conf
Multi-project reticle floorplanning and wafer dicing.
ISPD
Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Xu Xu, Alexander Zelikovsky
2004 B conf
Power efficient monitoring management in sensor networks.
WCNC
Piotr Berman, Gruia Calinescu, C. Shah, Alexander Zelikovsky
2004 J jnl
Scalable Heuristics for Design of DNA Probe Arrays.
J. Comput. Biol.
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2004 J jnl
Selecting Forwarding Neighbors in Wireless Ad Hoc Networks.
Mob. Networks Appl.
Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky
2004 A conf
SyD: A Middleware Testbed for Collaborative Applications over Small Heterogeneous Devices and Data Stores.
Middleware
Sushil K. Prasad, Vijay K. Madisetti, Shamkant B. Navathe, Raj Sunderraman, Erdogan Dogdu, Anu G. Bourgeois, Michael Weeks, Bing Liu, Janaka Balasooriya, Arthi Hariharan, Wanxia Xie, Praveen Madiraju, Srilaxmi Malladi, Raghupathy Sivakumar, Alexander Zelikovsky, Yanqing Zhang, Yi Pan, Saeid Belkasim
2004 B conf
The Polymatroid Steiner Problems.
ISAAC
Gruia Calinescu, Alexander Zelikovsky
2003 J jnl
A New Approximation Algorithm for Finding Heavy Planar Subgraphs.
Algorithmica
Gruia Calinescu, Cristina G. Fernandes, Howard J. Karloff, Alexander Zelikovsky
2003 A conf
Area Fill Generation With Inherent Data Volume Reduction.
DATE
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky, Yuhong Zheng
2003 C conf
Design Flow Enhancements for DNA Arrays.
ICCD
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2003 B conf
Engineering a scalable placement heuristic for DNA probe arrays.
RECOMB
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2003 A conf
Evaluation of Placement Techniques for DNA Probe Array Layout.
ICCAD
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2003 — conf
Highly scalable algorithms for rectilinear and octilinear Steiner trees.
ASP-DAC
Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2003 B conf
Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem.
WADS
Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky
2003 J jnl
Minimum buffered routing with bounded capacitive load for slew rate and reliability control.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2003 A conf
Network Lifetime and Power Assignment in ad hoc Wireless Networks.
ESA
Gruia Calinescu, Sanjiv Kapoor, Alexander Olshevsky, Alexander Zelikovsky
2003 J jnl
On the skew-bounded minimum-buffer routing tree problem.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Christoph Albrecht, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2003 B conf
Power efficient range assignment in ad-hoc wireless networks.
WCNC
Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky
2003 B conf
Primal-dual algorithms for QoS multimedia multicast.
GLOBECOM
Gruia Calinescu, Cristina G. Fernandes, Ion I. Mandoiu, Alexander Olshevsky, K. Yang, Alexander Zelikovsky
2003 J jnl
The moving-target traveling salesman problem.
J. Algorithms
Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
2003 B conf
Toward an Easy Programming Environment for Implementing Mobile Applications: A Fleet Application Case Study using SyD Middleware.
COMPSAC
Sushil K. Prasad, Michael Weeks, Yanqing Zhang, Alexander Zelikovsky, Saeid Belkasim, Raj Sunderraman, Vijay K. Madisetti
2002 J jnl
Area fill synthesis for uniform layout density.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky
2002 — conf
Auctions with Buyer Preferences.
Information Systems: The e-Business Challenge
C. Bandela, Yu Chen, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2002 C conf
Border Length Minimization in DNA Array Design.
WABI
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2002 — conf
Closing the smoothness and uniformity gap in area fill synthesis.
ISPD
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky
2002 — conf
Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing.
ASP-DAC/VLSI Design
Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2002 — conf
Mobile Fleet Application using Soap and System on Devices (SYD) Middleware Technologies.
Communications, Internet, and Information Technology
Sushil K. Prasad, Michael Weeks, Yanqing Zhang, Alexander Zelikovsky, Saeid Belkasim, Rajshekhar Sunderraman, Vijay K. Madisetti
2002 J jnl
Provably good global buffering by generalized multiterminalmulticommodity flow approximation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2002 — conf
Symmetric Connectivity with Minimum Power Consumption in Radio Networks.
IFIP TCS
Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky
2001 J jnl
An improved approximation scheme for the Group Steiner Problem.
Networks
Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
2001 — conf
Hierarchical dummy fill for process uniformity.
ASP-DAC
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky
2001 A conf
Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control.
ICCAD
Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2001 — conf
New graph bipartizations for double-exposure, bright field alternating phase-shift mask layout.
ASP-DAC
Andrew B. Kahng, Shailesh Vaya, Alexander Zelikovsky
2001 B conf
Practical Approximation Algorithms for Separable Packing Linear Programs.
WADS
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2001 J jnl
Practical Approximation Algorithms for Zero- and Bounded-Skew Trees.
SIAM J. Discret. Math.
Alexander Zelikovsky, Ion I. Mandoiu
2001 A* conf
Practical approximation algorithms for zero- and bounded-skew trees.
SODA
Alexander Zelikovsky, Ion I. Mandoiu
2001 — conf
Provably good global buffering by multi-terminal multicommodity flow approximation.
ASP-DAC
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2001 — conf
Selecting forwarding neighbors in wireless Ad Hoc networks.
DIAL-M
Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky
2000 J jnl
A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points.
Inf. Process. Lett.
Ion I. Mandoiu, Alexander Zelikovsky
2000 A* conf
Improved Steiner tree approximation in graphs.
SODA
Gabriel Robins, Alexander Zelikovsky
2000 — conf
Monte-Carlo algorithms for layout density control.
ASP-DAC
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky
2000 J jnl
New approximation algorithms for routing with multiport terminals.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
2000 J jnl
Optimal phase conflict removal for layout of dark field alternatingphase shifting masks.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Piotr Berman, Andrew B. Kahng, Devendra Vidhani, Huijuan Wang, Alexander Zelikovsky
2000 A* conf
Practical iterated fill synthesis for CMP uniformity.
DAC
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky
2000 A conf
Provably Good Global Buffering Using an Available Buffer Block Plan.
ICCAD
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
1999 J jnl
Filling algorithms and analyses for layout density control.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Gabriel Robins, Anish Singh, Alexander Zelikovsky
1999 — conf
New Multilevel and Hierarchical Algorithms for Layout Density Control.
ASP-DAC
Andrew B. Kahng, Gabriel Robins, Anish Singh, Alexander Zelikovsky
1999 Misc conf
New and Exact Filling Algorithms for Layout Density Control.
VLSI Design
Andrew B. Kahng, Gabriel Robins, Anish Singh, Alexander Zelikovsky
1999 J jnl
On wirelength estimations for row-based placement.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew E. Caldwell, Andrew B. Kahng, Stefanus Mantik, Igor L. Markov, Alexander Zelikovsky
1999 — conf
Optimal phase conflict removal for layout of dark field alternating phase shifting masks.
ISPD
Piotr Berman, Andrew B. Kahng, Devendra Vidhani, Huijuan Wang, Alexander Zelikovsky
1999 — conf
Optimization of Linear Placements for Wirelength Minimization with Free Sites.
ASP-DAC
Andrew B. Kahng, Paul Tucker, Alexander Zelikovsky
1999 B conf
The T-join Problem in Sparse Graphs: Applications to Phase Assignment Problem in VLSI Mask Layout.
WADS
Piotr Berman, Andrew B. Kahng, Devendra Vidhani, Alexander Zelikovsky
1999 A conf
The associative-skew clock routing problem.
ICCAD
Yu Chen, Andrew B. Kahng, Gang Qu, Alexander Zelikovsky
1998 — conf
Filling and slotting: analysis and algorithms.
ISPD
Andrew B. Kahng, Gabriel Robins, Anish Singh, Huijuan Wang, Alexander Zelikovsky
1998 A conf
Improved Approximation Bounds for the Group Steiner Problem.
DATE
Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
1998 A conf
Moving-Target TSP and Related Problems.
ESA
Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
1998 — conf
On wirelength estimations for row-based placement.
ISPD
Andrew E. Caldwell, Andrew B. Kahng, Stefanus Mantik, Igor L. Markov, Alexander Zelikovsky
1997 J jnl
A Series of Approximation Algorithms for the Acyclic Directed Steiner Tree Problem.
Algorithmica
Alexander Zelikovsky
1997 J jnl
An Approximation Algorithm for the Bandwidth Problem on Dense Graphs
Electron. Colloquium Comput. Complex.
Marek Karpinski, Juergen Wirtgen, Alexander Zelikovsky
1997 J jnl
Approximating Dense Cases of Covering Problems
Electron. Colloquium Comput. Complex.
Marek Karpinski, Alexander Zelikovsky
1997 — conf
Approximating dense cases of covering problems.
Network Design: Connectivity and Facilities Location
Marek Karpinski, Alexander Zelikovsky
1997 J jnl
Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem.
Discret. Comput. Geom.
Ulrich Fößmeier, Michael Kaufmann, Alexander Zelikovsky
1997 J jnl
New Approximation Algorithms for the Steiner Tree Problems.
J. Comb. Optim.
Marek Karpinski, Alexander Zelikovsky
1997 — conf
Provably good routing tree construction with multi-port terminals.
ISPD
C. Douglass Bateman, Christopher S. Helvig, Gabriel Robins, Alexander Zelikovsky
1995 J jnl
1.757 and 1.267 - Approximation Algorithms for the Network and Rectilinear Steiner Tree Problems
Electron. Colloquium Comput. Complex.
Marek Karpinski, Alexander Zelikovsky
1995 J jnl
New Approximation Algorithms for the Steiner Tree Problems
Electron. Colloquium Comput. Complex.
Marek Karpinski, Alexander Zelikovsky
1995 B conf
Spanning Closed Trail and Hamiltonian Cycle in Grid Graphs.
ISAAC
Cho Hwan-Gue, Alexander Zelikovsky
1994 A conf
Approaching the 5/4-Approximation for Rectilinear Steiner Trees.
ESA
Piotr Berman, Ulrich Fößmeier, Marek Karpinski, Michael Kaufmann, Alexander Zelikovsky
1993 J jnl
A Faster Approximation Algorithm for the Steiner Tree Problem in Graphs.
Inf. Process. Lett.
Alexander Zelikovsky
1993 J jnl
An 11/6-Approximation Algorithm for the Network Steiner Problem.
Algorithmica
Alexander Zelikovsky
1993 B conf
An approximation algorithm for weighted itk-polymatroids and the Steiner tree problem in graphs.
IPCO
Alexander Zelikovsky
1993 B conf
Faster Approximation Algorithms for the Rectilinear Steiner Tree Problem.
ISAAC
Ulrich Fößmeier, Michael Kaufmann, Alexander Zelikovsky
1993 J jnl
The last achievements in Steiner tree approximations.
Comput. Sci. J. Moldova
Alexander Zelikovsky