Alexander V. Spirov

42 papers A 2C 2Misc 3Journal 26Unranked 9

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Body plan evolvability: The role of variability in gene regulatory networks. J. Bioinform. Comput. Biol. Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway
2023	J	`jnl`	Evolution of the RNA world: From signals to codes. Biosyst. Alexander V. Spirov
2023	J	`jnl`	Problem of Domain/Building Block Preservation in the Evolution of Biological Macromolecules and Evolutionary Computation. IEEE ACM Trans. Comput. Biol. Bioinform. Alexander V. Spirov, Ekaterina M. Myasnikova
2021	J	`jnl`	Modeling SELEX for regulatory regions using Royal Road and Royal Staircase fitness functions. Biosyst. Anton V. Eremeev, Alexander V. Spirov
2021	J	`jnl`	Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. J. Comput. Biol. Ekaterina M. Myasnikova, Marat A. Sabirov, Alexander V. Spirov
2020	J	`jnl`	Gene regulatory networks in Biosyst. Ekaterina M. Myasnikova, Alexander V. Spirov
2020	—	`conf`	Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. ISBRA Ekaterina M. Myasnikova, Victoria Yu. Samuta, Alexander V. Spirov
2019	—	`conf`	Evaluation of runtime bounds for SELEX procedure with high selection pressure. GECCO (Companion) Anton V. Eremeev, Alexander V. Spirov
2019	J	`jnl`	Linguistic modelling of gene regulation: Translation from the language of experiments to the language of modelling. ICT Express Alexander V. Spirov, Ekaterina M. Myasnikova
2019	J	`jnl`	Noise model estimation with application to gene expression. J. Bioinform. Comput. Biol. Polina Zhornikova, Nina Golyandina, Alexander V. Spirov
2019	—	`conf`	Techniques from evolutionary computation to implement as experimental approaches in synthetic biology: tests in silico. GECCO (Companion) Alexander V. Spirov, Ekaterina M. Myasnikova
2018	J	`jnl`	Modularity in biological evolution and evolutionary computation. CoRR Anton V. Eremeev, Alexander V. Spirov
2018	J	`jnl`	Relative sensitivity analysis of the predictive properties of sloppy models. J. Bioinform. Comput. Biol. Ekaterina M. Myasnikova, Alexander V. Spirov
2018	J	`jnl`	Robustness of expression pattern formation due to dynamic equilibrium in gap gene system of an early Biosyst. Ekaterina M. Myasnikova, Alexander V. Spirov
2018	J	`jnl`	Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. J. Comput. Biol. Theodore Alexandrov, Nina Golyandina, David M. Holloway, Alexander Shlemov, Alexander V. Spirov
2016	J	`jnl`	Sequential construction of a model for modular gene expression control, applied to spatial patterning of the J. Bioinform. Comput. Biol. Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway
2015	J	`jnl`	Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem. Inf. Sci. Leonid Zamdborg, David M. Holloway, Juan Julián Merelo Guervós, Vladimir F. Levchenko, Alexander V. Spirov
2014	J	`jnl`	Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites. Parallel Process. Lett. Alexander V. Spirov, Elizaveta A. Zagriychuk, David M. Holloway
2013	—	`conf`	Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. PRIB Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway
2013	Misc	`conf`	Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development. ICCS Alexander V. Spirov, David M. Holloway
2012	C	`conf`	Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites. IJCCI David M. Holloway, Alexander B. Kazansky, Alexander V. Spirov
2012	C	`conf`	Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback. CIBCB Alexander V. Spirov, David M. Holloway
2012	Misc	`conf`	Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. ICCS Nina Golyandina, David M. Holloway, Francisco J. P. Lopes, Alexander V. Spirov, Ekaterina N. Spirova, Konstantin Usevich
2012	—	`conf`	Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. EvoBIO Alexander V. Spirov, Nina Golyandina, David M. Holloway, Theodore Alexandrov, Ekaterina N. Spirova, Francisco J. P. Lopes
2011	J	`jnl`	Gene Expression Noise in Spatial Patterning: PLoS Comput. Biol. David M. Holloway, Francisco J. P. Lopes, Luciano da Fontoura Costa, Bruno Augusto Nassif Travençolo, Nina Golyandina, Konstantin Usevich, Alexander V. Spirov
2011	—	`conf`	Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions. IJCCI (ECTA-FCTA) Alexander V. Spirov, David M. Holloway
2010	Misc	`conf`	Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations. ICCS Alexander V. Spirov, David M. Holloway
2009	J	`jnl`	Canalization of Gene Expression and Domain Shifts in the PLoS Comput. Biol. Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz
2009	J	`jnl`	Forced Evolution in Silico by Artificial Transposons and their Genetic Operators: The John Muir Ant Problem CoRR Alexander V. Spirov, Alexander B. Kazansky, Leonid Zamdborg, Juan Julián Merelo Guervós, Vladimir F. Levchenko
2008	J	`jnl`	Singular Spectrum Analysis of Gene Expression Profiles of Early J. Electr. Comput. Eng. Theodore Alexandrov, Nina Golyandina, Alexander V. Spirov
2008	J	`jnl`	Spatial Bistability Generates PLoS Comput. Biol. Francisco J. P. Lopes, Fernando M. C. Vieira, David M. Holloway, Paulo Mascarello Bisch, Alexander V. Spirov
2003	J	`jnl`	Evolutionary Techniques for Image Processing a Large Dataset of Early EURASIP J. Adv. Signal Process. Alexander V. Spirov, David M. Holloway
2003	J	`jnl`	Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. Silico Biol. Alexander V. Spirov, David M. Holloway
2002	J	`jnl`	HOX Pro DB: the functional genomics of hox ensembles. Nucleic Acids Res. Alexander V. Spirov, Mikhail Borovsky, Olesya A. Spirova
2002	A	`conf`	Jumping Genes-mutators Can Rise Efficacy Of Evolutionary Search. GECCO Alexander V. Spirov, Alexander B. Kazansky
2002	J	`jnl`	Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern. Real Time Imaging Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz
2001	—	`conf`	Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression. EvoWorkshops Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
2000	—	`conf`	Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid. EvoWorkshops Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
2000	J	`jnl`	HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. Alexander V. Spirov, Timothy Bowler, John Reinitz
1998	J	`jnl`	Graphical interface to the genetic network database GeNet. Bioinform. Vassili N. Serov, Alexander V. Spirov, Maria Samsonova
1998	—	`conf`	Transposon Element Technique Applied to GA-Based John Muir's Trail Test. HPCN Europe Alexander V. Spirov, A. S. Kadyrov
1996	A	`conf`	Self-Assemblage of Gene Nets in Evolution via Recruiting of New Netters. PPSN Alexander V. Spirov