Alexander V. Alekseyenko

34 papers Misc 16Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
Machine learning in healthcare citizen science: A scoping review.
Int. J. Medical Informatics
Ranga Baminiwatte, Blessing Torsu, Dmitry Scherbakov, Abolfazl Mollalo, Jihad S. Obeid, Alexander V. Alekseyenko, Leslie A. Lenert
2024 J jnl
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.
J. Am. Medical Informatics Assoc.
Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece D. Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams
2024 J jnl
Geospatial Analysis of the Association Between Medicaid Expansion, Minimum Wage Policies, and Alzheimer's Disease Dementia Prevalence in the United States.
Inf.
Abolfazl Mollalo, Sara Knox, Jessica Meng, Andreana Benitez, Leslie A. Lenert, Alexander V. Alekseyenko
2023 J jnl
Not all phenotypes are created equal: covariates of success in e-phenotype specification.
J. Am. Medical Informatics Assoc.
Bashir Hamidi, Patrick A. Flume, Kit N. Simpson, Alexander V. Alekseyenko
2023 J jnl
Online algorithm for assignment of specimens to pooled or individual testing using risk models provides a practical way to increase testing capacity.
F1000Research
Alexander V. Alekseyenko
2022 Misc conf
Building Determinants of Health Ontology of Mappable Elements (DHOME).
AMIA
Lauren Cuppy, Tami Crawford, Nikunja Swain, Alexander V. Alekseyenko
2021 J jnl
A deep learning segmentation strategy that minimizes the amount of manually annotated images.
F1000Research
Thierry Pécot, Alexander V. Alekseyenko, Kristin Wallace
2021 J jnl
A phylogenetic approach for weighting genetic sequences.
BMC Bioinform.
Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
2021 Misc conf
Colonizing Microbiome as a Determinant of COVID-19 Outcome: A Pilot Study.
AMIA
Alexander V. Alekseyenko, Bashir Hamidi, Stéphane M. Meystre
2021 J jnl
Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank.
J. Am. Medical Informatics Assoc.
Alexander V. Alekseyenko, Bashir Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts, James E. Madory, Steven L. Carroll, Jihad S. Obeid, Leslie A. Lenert
2021 Misc conf
Natural Language Processing and COVID-19 Predictive Analytics to Enable and Optimize SARS-CoV-2 Pooled Testing.
AMIA
Stéphane M. Meystre, Paul M. Heider, Jihad S. Obeid, Alexander V. Alekseyenko, James E. Madory
2021 J jnl
Natural language processing enabling COVID-19 predictive analytics to support data-driven patient advising and pooled testing.
J. Am. Medical Informatics Assoc.
Stéphane M. Meystre, Paul M. Heider, Youngjun Kim, Matthew Davis, Jihad S. Obeid, James E. Madory, Alexander V. Alekseyenko
2020 Misc conf
Actionable Opportunities for Improving Opioid Prescribing through Use of Informatics.
AMIA
Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko
2020 Misc conf
Informatics Architecture for Phenotyped Microbiome Data Generation from Just-in-Time Clinical Microbiology Specimens from CTSA Network Producers.
AMIA
Alexander V. Alekseyenko
2020 Misc conf
Informatics Challenges of COVID-19 Crisis: A Comprehensive Response from An Academic Health System.
AMIA
Alexander V. Alekseyenko, Leslie A. Lenert
2019 Misc conf
Actionable opportunities for improving knowledge at intersectionof dental and medical data.
AMIA
Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko
2019 Misc conf
Multivariate Pathway Enrichment Analysis for Interpreting Expression Profiles.
AMIA
Ali Shojaee Bakhtiari, Kristin Wallace, Alexander V. Alekseyenko
2019 J jnl
OHMI: the ontology of host-microbiome interactions.
J. Biomed. Semant.
Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko, Jihad S. Obeid
2019 Misc conf
Simulation Study of Just-in-Time Specimen Recruitment from University-Wide e-Phenotypes of Interest.
AMIA
Bashir Hamidi, Leslie A. Lenert, Alexander V. Alekseyenko
2018 J jnl
BioSimulator.jl: Stochastic simulation in Julia.
Comput. Methods Programs Biomed.
Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander V. Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary E. Sehl
2018 J jnl
BioSimulator.jl: Stochastic simulation in Julia.
CoRR
Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander V. Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary E. Sehl
2018 Misc conf
The Hidden Microbiome Pipeline: Providing Access to Clinical Microbiome Specimens, Sequences, and Informatics Resources.
AMIA
Bashir Hamidi, Leslie A. Lenert, Jihad S. Obeid, Alexander V. Alekseyenko
2017 J jnl
A general framework for association analysis of microbial communities on a taxonomic tree.
Bioinform.
Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko, Hongzhe Li
2017 Misc conf
Local Causal Networks Discover Predictive Cytokine Biomarkers of Scleroderma.
AMIA
Ali Shojaee Bakhtiari, Galina S. Bogatkevich, Alexander V. Alekseyenko
2017 Misc conf
The Impact of Human Microbiome on Precision Medicine.
AMIA
Alexander V. Alekseyenko, Lita M. Proctor, Paul Carlson, Scott A. Jackson, Connie Chen
2016 Misc conf
Comprehensive Evaluation of Univariate and Multivariate Distributions for Machine Learning With Microbiome Data.
AMIA
Ali Shojaee Bakhtiari, Alexander V. Alekseyenko
2016 Misc conf
Heteroscedastic Omics Data Analysis: Distance-Based Multivariate Approach.
AMIA
Alexander V. Alekseyenko
2016 J jnl
Multivariate Welch
Bioinform.
Alexander V. Alekseyenko
2016 J jnl
PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances.
Bioinform.
Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko
2016 Misc conf
The Human Microbiome: Informatics Challenges and Opportunities.
AMIA
Alexander V. Alekseyenko, Michael J. Becich, Todd Z. DeSantis, Jack A. Gilbert, Georg K. Gerber
2011 Misc conf
Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data.
Pacific Symposium on Biocomputing
Susan P. Holmes, Alexander V. Alekseyenko, Alden Timme, Tyrrell Nelson, Pankaj Jay Pasricha, Alfred Spormann
2009 J jnl
Accurate Stochastic Simulation via the Step Anticipation
J. Comput. Biol.
Mary E. Sehl, Alexander V. Alekseyenko, Kenneth Lange
2007 J jnl
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
Bioinform.
Alexander V. Alekseyenko, Christopher J. Lee
2007 J jnl
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.
Nucleic Acids Res.
Namshin Kim, Alexander V. Alekseyenko, Meenakshi Roy, Christopher J. Lee