Alexander Schug

24 papers A 1C 3Journal 16Unranked 4
YearRankTypeTitle / Venue / Authors
2025 C conf
Large-Scale Modeling of the Extracellular Matrix on Hybrid Supercomputers Using Highly Parallel Stencil Computations.
ISC
Julian Herold, Paul Brinkmeier, Markus Götz, Alexander Schug, Achim Streit
2024 J jnl
pycofitness - Evaluating the fitness landscape of RNA and protein sequences.
Bioinform.
Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug
2023 J jnl
Development of a scoring function for comparing simulated and experimental tumor spheroids.
PLoS Comput. Biol.
Julian Herold, Eric Behle, Jakob Rosenbauer, Jacopo Ferruzzi, Alexander Schug
2023 C conf
Massively Parallel Genetic Optimization Through Asynchronous Propagation of Populations.
ISC
Oskar Taubert, Marie Weiel, Daniel Coquelin, Anis Farshian, Charlotte Debus, Alexander Schug, Achim Streit, Markus Götz
2023 J jnl
Massively Parallel Genetic Optimization through Asynchronous Propagation of Populations.
CoRR
Oskar Taubert, Marie Weiel, Daniel Coquelin, Anis Farshian, Charlotte Debus, Alexander Schug, Achim Streit, Markus Götz
2021 J jnl
Dynamic particle swarm optimization of biomolecular simulation parameters with flexible objective functions.
Nat. Mach. Intell.
Marie Weiel, Markus Götz, André Klein, Daniel Coquelin, Ralf Floca, Alexander Schug
2021 — conf
JUWELS Booster - A Supercomputer for Large-Scale AI Research.
ISC Workshops
Stefan Kesselheim, Andreas Herten, Kai Krajsek, Jan Ebert, Jenia Jitsev, Mehdi Cherti, Michael Langguth, Bing Gong, Scarlet Stadtler, Amirpasha Mozaffari, Gabriele Cavallaro, Rocco Sedona, Alexander Schug, Alexandre Strube, Roshni Kamath, Martin G. Schultz, Morris Riedel, Thomas Lippert
2021 J jnl
JUWELS Booster - A Supercomputer for Large-Scale AI Research.
CoRR
Stefan Kesselheim, Andreas Herten, Kai Krajsek, Jan Ebert, Jenia Jitsev, Mehdi Cherti, Michael Langguth, Bing Gong, Scarlet Stadtler, Amirpasha Mozaffari, Gabriele Cavallaro, Rocco Sedona, Alexander Schug, Alexandre Strube, Roshni Kamath, Martin G. Schultz, Morris Riedel, Thomas Lippert
2021 J jnl
Structural Analysis of a Genetically Encoded FRET Biosensor by SAXS and MD Simulations.
Sensors
Ines Reinartz, Mona Sarter, Julia Otten, Henning Höfig, Martina Pohl, Alexander Schug, Andreas M. Stadler, Jörg Fitter
2021 J jnl
pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics.
J. Open Source Softw.
Arthur Voronin, Alexander Schug
2020 J jnl
Cells in Silico - introducing a high-performance framework for large-scale tissue modeling.
BMC Bioinform.
Marco Berghoff, Jakob Rosenbauer, Felix Hoffmann, Alexander Schug
2020 C conf
Loss Scheduling for Class-Imbalanced Image Segmentation Problems.
ICMLA
Oskar Taubert, Markus Götz, Alexander Schug, Achim Streit
2020 J jnl
Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis.
PLoS Comput. Biol.
Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug
2020 J jnl
pydca v1.0: a comprehensive software for direct coupling analysis of RNA and protein sequences.
Bioinform.
Mehari B. Zerihun, Fabrizio Pucci, Emanuel K. Peter, Alexander Schug
2019 J jnl
Optimization of the dielectric layer for electrowetting on dielectric.
Integr.
Semih Turk, Alexander Schug, Reinhard Viga, Andreas Jupe, Holger Vogt
2019 J jnl
Rapid interpretation of small-angle X-ray scattering data.
PLoS Comput. Biol.
Marie Weiel, Ines Reinartz, Alexander Schug
2019 J jnl
diSTruct v1.0: generating biomolecular structures from distance constraints.
Bioinform.
Oskar Taubert, Ines Reinartz, Henning Meyerhenke, Alexander Schug
2017 A conf
Maxent-Stress Optimization of 3D Biomolecular Models.
ESA
Michael Wegner, Oskar Taubert, Alexander Schug, Henning Meyerhenke
2017 J jnl
Maxent-Stress Optimization of 3D Biomolecular Models.
CoRR
Michael Wegner, Oskar Taubert, Alexander Schug, Henning Meyerhenke
2014 — conf
Integration of eSBMTools into the MoSGrid Portal Using the gUSE Technology.
IWSG
Stefan Bozic, Jens Krüger, Claude Sinner, Benjamin Lutz, Alexander Schug, Ivan Kondov
2014 J jnl
Native structure-based modeling and simulation of biomolecular systems per mouse click.
BMC Bioinform.
Benjamin Lutz, Claude Sinner, Stefan Bozic, Ivan Kondov, Alexander Schug
2013 J jnl
eSBMTools 1.0: enhanced native structure-based modeling tools.
Bioinform.
Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, Alexander Schug
2007 — conf
Massively Parallel All Atom Protein Folding in a Single Day.
PARCO
Abhinav Verma, Srinivasa M. Gopal, Alexander Schug, Jung S. Oh, Konstantin V. Klenin, Kyu H. Lee, Wolfgang Wenzel
2004 — conf
Protein Structure Prediction with Stochastic Optimization Methods: Folding and Misfolding the Villin Headpiece.
ICCSA (3)
Thomas Herges, Alexander Schug, Wolfgang Wenzel