Alexander Schliep

69 papers A 1B 5C 4Misc 1Journal 35Unranked 21

Year	Rank	Type	Title / Venue / Authors
2023	B	`conf`	Diverse Data Expansion with Semi-Supervised k-Determinantal Point Processes. IEEE Big Data Simon Johansson, Ola Engkvist, Morteza Haghir Chehreghani, Alexander Schliep
2021	J	`jnl`	Effects of network topology on the performance of consensus and distributed learning of SVMs using ADMM. PeerJ Comput. Sci. Shirin Tavara, Alexander Schliep
2021	J	`jnl`	Fast parallel construction of variable-length Markov chains. BMC Bioinform. Joel Gustafsson, Peter Norberg, Jan R. Qvick-Wester, Alexander Schliep
2021	—	`conf`	Federated Learning of Oligonucleotide Drug Molecule Thermodynamics with Differentially Private ADMM-Based SVM. PKDD/ECML Workshops (2) Shirin Tavara, Alexander Schliep, Debabrota Basu
2020	J	`jnl`	Blood Glucose Prediction with Variance Estimation Using Recurrent Neural Networks. J. Heal. Informatics Res. John Martinsson, Alexander Schliep, Björn Eliasson, Olof Mogren
2019	Misc	`conf`	A Modeling Approach for Bioinformatics Workflows. PoEM Laiz Heckmann Barbalho de Figueroa, Rema Salman, Jennifer Horkoff, Soni Chauhan, Marcela Davila, Francisco Gomes de Oliveira Neto, Alexander Schliep
2019	J	`jnl`	Bayesian localization of CNV candidates in WGS data within minutes. Algorithms Mol. Biol. John Wiedenhoeft, Alex Cagan, Rimma Kozhemyakina, Rimma Gulevich, Alexander Schliep
2019	J	`jnl`	Bayesian optimization in ab initio nuclear physics. CoRR Andreas Ekström, Christian Forssén, Christos Dimitrakakis, Devdatt P. Dubhashi, Håkan T. Johansson, Azam Sheikh Muhammad, Hans Salomonsson, Alexander Schliep
2018	B	`conf`	An Optimization Problem Related to Bloom Filters with Bit Patterns. SOFSEM Peter Damaschke, Alexander Schliep
2018	—	`conf`	Automatic Blood Glucose Prediction with Confidence Using Recurrent Neural Networks. KDH@IJCAI John Martinsson, Alexander Schliep, Björn Eliasson, Christian Meijner, Simon Persson, Olof Mogren
2018	—	`conf`	Clustering Vehicle Maneuver Trajectories Using Mixtures of Hidden Markov Models. ITSC John Martinsson, Nasser Mohammadiha, Alexander Schliep
2018	C	`conf`	Effect of Network Topology on the Performance of ADMM-Based SVMs. SBAC-PAD Shirin Tavara, Alexander Schliep
2018	—	`conf`	Statistical Sensor Modelling for Autonomous Driving Using Autoregressive Input-Output HMMs. ITSC Edvin Listo Zec, Nasser Mohammadiha, Alexander Schliep
2016	J	`jnl`	Automatic learning of pre-miRNAs from different species. BMC Bioinform. Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho
2016	B	`conf`	Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. RECOMB John Wiedenhoeft, Eric Brugel, Alexander Schliep
2016	J	`jnl`	Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression. PLoS Comput. Biol. John Wiedenhoeft, Eric Brugel, Alexander Schliep
2014	J	`jnl`	The discriminant power of RNA features for pre-miRNA recognition. BMC Bioinform. Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho
2014	J	`jnl`	TreQ-CG: Clustering Accelerates High-Throughput Sequencing Read Mapping. CoRR Md Pavel Mahmud, Alexander Schliep
2014	J	`jnl`	Turtle: Identifying frequent Bioinform. Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep
2013	J	`jnl`	Turtle: Identifying frequent k-mers with cache-efficient algorithms CoRR Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep
2012	J	`jnl`	CLEVER: clique-enumerating variant finder. Bioinform. Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth
2012	J	`jnl`	Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious Bioinform. Md Pavel Mahmud, John Wiedenhoeft, Alexander Schliep
2012	J	`jnl`	SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding. J. Comput. Biol. Rajat Shuvro Roy, Kevin C. Chen, Anirvan M. Sengupta, Alexander Schliep
2011	J	`jnl`	Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinform. Christoph Hafemeister, Ivan G. Costa, Alexander Schönhuth, Alexander Schliep
2011	J	`jnl`	Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models. Bioinform. Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse
2011	J	`jnl`	Fast MCMC Sampling for Hidden Markov Models to Determine Copy Number Variations. BMC Bioinform. Md Pavel Mahmud, Alexander Schliep
2011	J	`jnl`	SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding CoRR Rajat Shuvro Roy, Kevin C. Chen, Anirvan M. Sengupta, Alexander Schliep
2011	J	`jnl`	Selecting Oligonucleotide Probes for Whole-Genome Tiling Arrays with a Cross-Hybridization Potential. IEEE ACM Trans. Comput. Biol. Bioinform. Christoph Hafemeister, Roland Krause, Alexander Schliep
2011	C	`conf`	Speeding Up Bayesian HMM by the Four Russians Method. WABI Md Pavel Mahmud, Alexander Schliep
2011	J	`jnl`	pGQL: A probabilistic graphical query language for gene expression time courses. BioData Min. Ruben Schilling, Ivan G. Costa, Alexander Schliep
2010	J	`jnl`	PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data. BMC Bioinform. Benjamin Georgi, Ivan Gesteira Costa, Alexander Schliep
2009	J	`jnl`	Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinform. Ivan G. Costa, Alexander Schönhuth, Christoph Hafemeister, Alexander Schliep
2008	—	`conf`	08301 Final Report - Group Testing in the Life Sciences. Group Testing in the Life Sciences Alexander Schliep, Nicolas Thierry-Mieg, Amin Shokrollahi
2008	J	`jnl`	Clustering cancer gene expression data: a comparative study. BMC Bioinform. Marcílio Carlos Pereira de Souto, Ivan G. Costa, Daniel S. A. de Araujo, Teresa Bernarda Ludermir, Alexander Schliep
2008	B	`conf`	Comparative study on normalization procedures for cluster analysis of gene expression datasets. IJCNN Marcílio Carlos Pereira de Souto, Daniel S. A. de Araujo, Ivan G. Costa, Rodrigo G. F. Soares, Teresa Bernarda Ludermir, Alexander Schliep
2008	J	`jnl`	Efficient Algorithms for the Computational Design of Optimal Tiling Arrays. IEEE ACM Trans. Comput. Biol. Bioinform. Alexander Schliep, Roland Krause
2008	—	`ed.`	Group Testing in the Life Sciences, 20.07. - 25.07.2008 Group Testing in the Life Sciences Alexander Schliep, Amin Shokrollahi, Nicolas Thierry-Mieg
2008	A	`conf`	Inferring differentiation pathways from gene expression. ISMB Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep
2008	J	`jnl`	New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design. J. Comput. Biol. Anthony J. Macula, Alexander Schliep, Morgan A. Bishop, Thomas E. Renz
2008	B	`conf`	Ranking and selecting clustering algorithms using a meta-learning approach. IJCNN Marcílio Carlos Pereira de Souto, Ricardo Bastos Cavalcante Prudêncio, Rodrigo G. F. Soares, Daniel S. A. de Araujo, Ivan G. Costa, Teresa Bernarda Ludermir, Alexander Schliep
2007	—	`conf`	Context-Specific Independence Mixture Modelling for Protein Families. PKDD Benjamin Georgi, Jörg Schultz, Alexander Schliep
2007	—	`conf`	Detecting functional modules from heterogenous mass data. LWA Alexander Schliep
2007	C	`conf`	Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. WABI Alexander Schliep, Roland Krause
2007	J	`jnl`	Identifying protein complexes directly from high-throughput TAP data with Markov random fields. BMC Bioinform. Wasinee Rungsarityotin, Roland Krause, Arno Schödl, Alexander Schliep
2007	J	`jnl`	Integer linear programming approaches for non-unique probe selection. Discret. Appl. Math. Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2007	—	`conf`	Mixture Model Based Group Inference in Fused Genotype and Phenotype Data. GfKl Benjamin Georgi, M. Anne Spence, Pamela Flodman, Alexander Schliep
2007	—	`ed.`	Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany. German Conference on Bioinformatics Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther
2007	J	`jnl`	Semi-supervised learning for the identification of syn-expressed genes from fused microarray and BMC Bioinform. Ivan G. Costa, Roland Krause, Lennart Opitz, Alexander Schliep
2007	—	`conf`	Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information. BSB Ivan G. Costa, Marcílio Carlos Pereira de Souto, Alexander Schliep
2006	—	`conf`	Context-specific independence mixture modeling for positional weight matrices. ISMB (Supplement of Bioinformatics) Benjamin Georgi, Alexander Schliep
2006	—	`conf`	Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. ISMB (Supplement of Bioinformatics) Alexander Schliep, Sven Rahmann
2006	—	`conf`	Joint Analysis of In-situ Hybridization and Gene Expression Data. GfKl Lennart Opitz, Alexander Schliep, Stefan Posch
2005	—	`conf`	An Indicator for the Number of Clusters: Using a Linear Map to Simplex Structure. GfKl Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep
2005	J	`jnl`	Analyzing Gene Expression Time-Courses. IEEE ACM Trans. Comput. Biol. Bioinform. Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth
2005	—	`conf`	On External Indices for Mixtures: Validating Mixtures of Genes. GfKl Ivan G. Costa, Alexander Schliep
2005	J	`jnl`	The Graphical Query Language: a tool for analysis of gene expression time-courses. Bioinform. Ivan G. Costa, Alexander Schönhuth, Alexander Schliep
2004	—	`conf`	Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
2004	—	`conf`	Robust inference of groups in gene expression time-courses using mixtures of HMMs. ISMB/ECCB (Supplement of Bioinformatics) Alexander Schliep, Christine Steinhoff, Alexander Schönhuth
2003	—	`conf`	Group Testing With DNA Chips: Generating Designs and Decoding Experiments. CSB Alexander Schliep, David C. Torney, Sven Rahmann
2003	—	`conf`	Using hidden Markov models to analyze gene expression time course data. ISMB (Supplement of Bioinformatics) Alexander Schliep, Alexander Schönhuth, Christine Steinhoff
2002	C	`conf`	ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader
2002	J	`jnl`	Selecting signature oligonucleotides to identify organisms using DNA arrays. Bioinform. Lars Kaderali, Alexander Schliep
2001	J	`jnl`	A new Algorithm for Accelerating Pair-Wise Computations of Melting Temperature. Electron. Notes Discret. Math. Lars Kaderali, Alexander Schliep
2001	J	`jnl`	Clustering protein sequences-structure prediction by transitive homology. Bioinform. Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
2001	J	`jnl`	Strongly Connected Components can Predict Protein Structure. Electron. Notes Discret. Math. Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
1999	—	`conf`	Clustering Protein Sequences ? Structure Prediction by Transitive Homology. German Conference on Bioinformatics Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
1999	—	`conf`	Learning Hidden Markov Model Topology. German Conference on Bioinformatics Alexander Schliep
1998	—	`conf`	Screening large clone libraries efficiently. German Conference on Bioinformatics Norman A. Doggett, Jonathan Longmire, Alexander Schliep, David C. Torney
1996	J	`jnl`	Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method. J. Comput. Biol. Emanuel Knill, Alexander Schliep, David C. Torney