Alexander R. A. Anderson

26 papers C 2Journal 24

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. Medical Image Anal. Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
2023	J	`jnl`	The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue. CoRR Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
2022	J	`jnl`	Developing tools for analyzing and viewing multiplexed images. Patterns Sandhya Prabhakaran, Chandler Gatenbee, Alexander R. A. Anderson
2022	J	`jnl`	Mistic: An open-source multiplexed image t-SNE viewer. Patterns Sandhya Prabhakaran, Chandler Gatenbee, Mark Robertson-Tessi, Jeffrey West, Amer A. Beg, Jhanelle Gray, Scott Antonia, Robert A. Gatenby, Alexander R. A. Anderson
2021	J	`jnl`	IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations. Bioinform. Jeffrey West, Yongqian Ma, Artem Kaznatcheev, Alexander R. A. Anderson
2021	J	`jnl`	The role of memory in non-genetic inheritance and its impact on cancer treatment resistance. PLoS Comput. Biol. Tyler Cassidy, Daniel Nichol, Mark Robertson-Tessi, Morgan Craig, Alexander R. A. Anderson
2020	J	`jnl`	From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response. PLoS Comput. Biol. Jill Gallaher, Susan Christine Massey, Andrea Hawkins-Daarud, Sonal S. Noticewala, Russell C. Rockne, Sandra K. Johnston, Luis Gonzalez-Cuyar, Joseph Juliano, Orlando Gil, Kristin R. Swanson, Peter D. Canoll, Alexander R. A. Anderson
2020	J	`jnl`	Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. PLoS Comput. Biol. Rafael R. Bravo, Etienne Baratchart, Jeffrey West, Ryan O. Schenck, Anna K. Miller, Jill Gallaher, Chandler Gatenbee, David Basanta, Mark Robertson-Tessi, Alexander R. A. Anderson
2019	J	`jnl`	Clonal hematopoiesis of indeterminate potential and its impact on patient trajectories after stem cell transplantation. PLoS Comput. Biol. Derek S. Park, Afua Abrafi Boakye, David E. Muench, H. Leighton Grimes, Pearlie K. Epling-Burnette, Philip K. Maini, Alexander R. A. Anderson, Michael B. Bonsall
2019	J	`jnl`	EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data. BMC Bioinform. Chandler Gatenbee, Ryan O. Schenck, Rafael R. Bravo, Alexander R. A. Anderson
2019	J	`jnl`	NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline. BMC Bioinform. Ryan O. Schenck, Eszter Lakatos, Chandler Gatenbee, Trevor A. Graham, Alexander R. A. Anderson
2017	J	`jnl`	Stem Cell Plasticity and Niche Dynamics in Cancer Progression. IEEE Trans. Biomed. Eng. Noemi Picco, Robert A. Gatenby, Alexander R. A. Anderson
2017	J	`jnl`	The Influence of Cellular Characteristics on the Evolution of Shape Homeostasis. Artif. Life Philip Gerlee, David Basanta, Alexander R. A. Anderson
2016	J	`jnl`	Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model. PLoS Comput. Biol. Jacob G. Scott, Alexander G. Fletcher, Alexander R. A. Anderson, Philip K. Maini
2015	J	`jnl`	Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance. PLoS Comput. Biol. Daniel Nichol, Peter Jeavons, Alexander G. Fletcher, Robert A. Bonomo, Philip K. Maini, Jerome L. Paul, Robert A. Gatenby, Alexander R. A. Anderson, Jacob G. Scott
2014	J	`jnl`	Microenvironmental Variables Must Influence Intrinsic Phenotypic Parameters of Cancer Stem Cells to Affect Tumourigenicity. PLoS Comput. Biol. Jacob G. Scott, Anita B. Hjelmeland, Prakash Chinnaiyan, Alexander R. A. Anderson, David Basanta
2013	J	`jnl`	Intrinsic cell factors that influence tumourigenicity in cancer stem cells - towards hallmarks of cancer stem cells CoRR Jacob G. Scott, Prakash Chinnaiyan, Alexander R. A. Anderson, Anita B. Hjelmeland, David Basanta
2010	C	`conf`	Evolving Homeostatic Tissue Using Genetic Algorithms. ALIFE Philip Gerlee, David Basanta, Alexander R. A. Anderson
2010	J	`jnl`	Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling. PLoS Comput. Biol. Katarzyna A. Rejniak, Shizhen E. Wang, Nicole S. Bryce, Hang Chang, Bahram Parvin, Jerome Jourquin, Lourdes Estrada, Joe W. Gray, Carlos L. Arteaga, Alissa M. Weaver, Vito Quaranta, Alexander R. A. Anderson
2009	J	`jnl`	Modelling evolutionary cell behaviour using neural networks: Application to tumour growth. Biosyst. Philip Gerlee, Alexander R. A. Anderson
2008	J	`jnl`	Mathematical modelling of cancer cell invasion of tissue. Math. Comput. Model. Ignacio Ramis-Conde, Mark A. J. Chaplain, Alexander R. A. Anderson
2008	C	`conf`	The gene-function relationship in the metabolism of yeast and digital organisms. ALIFE Philip Gerlee, Torbjörn Lundh, Bing Zhang, Alexander R. A. Anderson
2006	J	`jnl`	Computational Methods and Results for Structured Multiscale Models of Tumor Invasion. Multiscale Model. Simul. Bruce P. Ayati, Glenn F. Webb, Alexander R. A. Anderson
2006	J	`jnl`	Mathematical modelling of the influence of blood rheological properties upon adaptative tumour-induced angiogenesis. Math. Comput. Model. Angélique Stéphanou, Steven R. McDougall, Alexander R. A. Anderson, Mark A. J. Chaplain
2005	J	`jnl`	Mathematical modelling of flow in 2D and 3D vascular networks: Applications to anti-angiogenic and chemotherapeutic drug strategies. Math. Comput. Model. Angélique Stéphanou, Steven R. McDougall, Alexander R. A. Anderson, Mark A. J. Chaplain
2000	J	`jnl`	Steady-state solutions of a generic model for the formation of capillary networks. Appl. Math. Lett. Fordyce A. Davidson, Alexander R. A. Anderson, Mark A. J. Chaplain