Alexander Junge

11 papers A* 1Journal 10
YearRankTypeTitle / Venue / Authors
2025 J jnl
Language Model Re-rankers are Steered by Lexical Similarities.
CoRR
Lovisa Hagström, Ercong Nie, Ruben Halifa, Helmut Schmid, Richard Johansson, Alexander Junge
2023 A* conf
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability Study.
SIGIR
Joakim Edin, Alexander Junge, Jakob D. Havtorn, Lasse Borgholt, Maria Maistro, Tuukka Ruotsalo, Lars Maaløe
2023 J jnl
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability Study.
CoRR
Joakim Edin, Alexander Junge, Jakob D. Havtorn, Lasse Borgholt, Maria Maistro, Tuukka Ruotsalo, Lars Maaløe
2022 J jnl
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration.
Database J. Biol. Databases Curation
Dhouha Grissa, Alexander Junge, Tudor I. Oprea, Lars Juhl Jensen
2020 J jnl
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision.
Bioinform.
Alexander Junge, Lars Juhl Jensen
2019 J jnl
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Nucleic Acids Res.
Damian Szklarczyk, Annika L. Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T. Doncheva, John H. Morris, Peer Bork, Lars Juhl Jensen, Christian von Mering
2017 J jnl
RAIN: RNA-protein Association and Interaction Networks.
Database J. Biol. Databases Curation
Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin
2017 J jnl
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.
Bioinform.
Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen
2016 J jnl
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform.
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2015 J jnl
Highlights from the tenth ISCB Student Council Symposium 2014.
BMC Bioinform.
Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico
2014 J jnl
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
BMC Syst. Biol.
Nicolas Alcaraz, Josch Pauling, Richa Batra, Eudes Barbosa, Alexander Junge, Anne Christensen, Vasco Ariston de Carvalho Azevedo, Henrik J. Ditzel, Jan Baumbach