Alexander Hoffmann

37 papers A* 1B 1C 2Journal 23Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A computational workflow for assessing drug effects on temporal signaling dynamics reveals robustness in stimulus-specific NFκB signaling. PLoS Comput. Biol. Emily R. Bozich, Xiaolu Guo, Jennifer L. Wilson, Alexander Hoffmann
2025	J	`jnl`	Gyselalib++: A Portable C++ Library for Semi-Lagrangian Kinetic and Gyrokinetic Simulations. J. Open Source Softw. Emily Bourne, Virginie Grandgirard, Yuuichi Asahi, Julien Bigot, Peter Donnel, Alexander Hoffmann, Abdelhadi Kara, Philipp Krah, Baptiste Legouix, Etienne Malaboeuf, Yann Munschy, Kevin Obrejan, Thomas Padioleau, Matthieu Protais, Pauline Vidal
2025	J	`jnl`	Reconstructing noisy gene regulation dynamics using extrinsic-noise-driven neural stochastic differential equations. PLoS Comput. Biol. Jiancheng Zhang, Xiangting Li, Xiaolu Guo, Zhaoyi You, Lucas Böttcher, Alex Mogilner, Alexander Hoffmann, Tom Chou, Mingtao Xia
2025	J	`jnl`	Teaching RDM in a smart advanced inorganic lab course and its provision in the DALIA platform. CoRR Alexander Hoffmann, Jochen Ortmeyer, Fabian Fink, Charles Tapley Hoyt, Jonathan D. Geiger, Paul Kehrein, Torsten Schrade, Sonja Herres-Pawlis
2023	J	`jnl`	Geometrical benchmarking and analysis of redox potentials of copper(I/II) guanidine-quinoline complexes: Comparison of semi-empirical tight-binding and DFT methods and the challenge of describing the entatic state (part III). J. Comput. Chem. Lukas Raßpe-Lange, Alexander Hoffmann, Christoph Udo Gertig, Joshua Heck, Kai Leonhard, Sonja Herres-Pawlis
2023	—	`conf`	RDM in Chemistry: How to Educate and Train Future Researchers to Manage Their Data. CoRDI Jochen Ortmeyer, Fabian Fink, Alexander Hoffmann, Sonja Herres-Pawlis
2022	J	`jnl`	TUCAN: A molecular identifier and descriptor applicable to the whole periodic table from hydrogen to oganesson. J. Cheminformatics Jan C. Brammer, Gerd Blanke, Claudia Kellner, Alexander Hoffmann, Sonja Herres-Pawlis, Ulrich Schatzschneider
2021	J	`jnl`	Analytische Ermittlung der Leiter-Leiter-Kapazität von Zweischichtwicklungen unter Berücksichtigung des Zwischenschiebers zur Vorausberechnung der Potenzialverteilung in der Ständerwicklung umrichtergespeister elektrischer Maschinen. Elektrotech. Informationstechnik Jan Ole Stockbrügger, Alexander Hoffmann, Benjamin Knebusch, Jochen Dittmann, Bernd Ponick
2021	J	`jnl`	Identifying the combinatorial control of signal-dependent transcription factors. PLoS Comput. Biol. Ning Wang, Diane Lefaudeux, Anup Mazumder, Jingyi Jessica Li, Alexander Hoffmann
2019	J	`jnl`	Identifying determinants of persistent MRSA bacteremia using mathematical modeling. PLoS Comput. Biol. Tsuyoshi Mikkaichi, Michael R. Yeaman, Alexander Hoffmann, MRSA Systems Immunobiology Group
2019	J	`jnl`	The MASi repository service - Comprehensive, metadata-driven and multi-community research data management. Future Gener. Comput. Syst. Richard Grunzke, Volker Hartmann, Thomas Jejkal, Helen Kollai, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Christiane Dressler, Julia Dolhoff, Julia Stanek, Alexander Hoffmann, Ralph Müller-Pfefferkorn, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Wolfgang E. Nagel
2018	J	`jnl`	Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Future Gener. Comput. Syst. Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2018	C	`conf`	Performance Evaluation of the Metadata-Driven MASi Research Data Management Repository Service. PDP Richard Grunzke, Volker Hartmann, Thomas Jejkal, Helen Kollai, Christiane Dressler, Julia Dolhoff, Julia Stanek, Hendrik Herold, Alexander Hoffmann, Ralph Müller-Pfefferkorn, Torsten Schrade, Sonja Herres-Pawlis, Gotthard Meinel, Wolfgang E. Nagel
2017	J	`jnl`	Metadata Management in the MoSGrid Science Gateway - Evaluation and the Expansion of Quantum Chemistry Support. J. Grid Comput. Richard Grunzke, Jens Krüger, René Jäkel, Wolfgang E. Nagel, Sonja Herres-Pawlis, Alexander Hoffmann
2017	J	`jnl`	Towards a metadata-driven multi-community research data management service. PeerJ Prepr. Richard Grunzke, Volker Hartmann, Thomas Jejkal, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Alexander Hoffmann, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Rainer Stotzka, Wolfgang E. Nagel
2016	J	`jnl`	Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry. J. Cheminformatics Junaid Arshad, Alexander Hoffmann, Sandra Gesing, Richard Grunzke, Jens Krüger, Tamás Kiss, Sonja Herres-Pawlis, Gábor Terstyánszky
2016	—	`conf`	Towards a Metadata-driven Multi-Community Research Data Management Service. IWSG Richard Grunzke, Volker Hartmann, Thomas Jejkal, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Alexander Hoffmann, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Rainer Stotzka, Wolfgang E. Nagel
2016	J	`jnl`	Using Science Gateways for Bridging the Differences between Research Infrastructures. J. Grid Comput. Sandra Gesing, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2015	J	`jnl`	Corrigendum: Geometrical and optical benchmarking of copper(II) guanidine-quinoline complexes: Insights from TD-DFT and many-body perturbation theory (Part II). J. Comput. Chem. Alexander Hoffmann, Martin Rohrmüller, Anton Jesser, Ines dos Santos Vieira, Wolf Gero Schmidt, Sonja Herres-Pawlis
2015	B	`conf`	Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery. e-Science Richard Grunzke, Alvaro Aguilera, Wolfgang E. Nagel, Jens Krüger, Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing
2015	J	`jnl`	Quantum chemical meta-workflows in MoSGrid. Concurr. Comput. Pract. Exp. Sonja Herres-Pawlis, Alexander Hoffmann, Ákos Balaskó, Péter Kacsuk, Georg Birkenheuer, André Brinkmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Gábor Terstyánszky, Noam Weingarten
2015	—	`conf`	Science gateways - leveraging modeling and simulations in HPC infrastructures via increased usability. HPCS Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2015	J	`jnl`	The Cu J. Comput. Chem. Martin Rohrmüller, Alexander Hoffmann, Christian Thierfelder, Sonja Herres-Pawlis, Wolf Gero Schmidt
2014	—	`conf`	Expansion of Quantum Chemical Metadata for Workflows in the MoSGrid Science Gateway. IWSG Sonja Herres-Pawlis, Alexander Hoffmann, Luis de la Garza, Jens Krüger, Richard Grunzke
2014	J	`jnl`	Geometrical and optical benchmarking of copper(II) guanidine-quinoline complexes: Insights from TD-DFT and many-body perturbation theory (part II). J. Comput. Chem. Alexander Hoffmann, Martin Rohrmüller, Anton Jesser, Ines dos Santos Vieira, Wolf Gero Schmidt, Sonja Herres-Pawlis
2014	J	`jnl`	Insights into the influence of dispersion correction in the theoretical treatment of guanidine-quinoline copper(I) complexes. J. Comput. Chem. Alexander Hoffmann, Richard Grunzke, Sonja Herres-Pawlis
2014	—	`conf`	Meta-Metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway. IWSG Sonja Herres-Pawlis, Alexander Hoffmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Wolfgang E. Nagel, Gábor Terstyánszky, Noam Weingarten
2014	—	`ch.`	Molecular Simulation Grid (MosGrid): A Science Gateway Tailored to the Molecular Simulation Community. Science Gateways for Distributed Computing Infrastructures Sandra Gesing, Jens Krüger, Richard Grunzke, Luis de la Garza, Sonja Herres-Pawlis, Alexander Hoffmann
2013	J	`jnl`	A Protein Turnover Signaling Motif Controls the Stimulus-Sensitivity of Stress Response Pathways. PLoS Comput. Biol. Paul Michael Loriaux, Alexander Hoffmann
2013	J	`jnl`	Characterizing the Relationship between Steady State and Response Using Analytical Expressions for the Steady States of Mass Action Models. PLoS Comput. Biol. Paul Michael Loriaux, Glenn Tesler, Alexander Hoffmann
2013	J	`jnl`	Dual Delayed Feedback Provides Sensitivity and Robustness to the NF- PLoS Comput. Biol. Diane M. Longo, Jangir Selimkhanov, Jeffrey D. Kearns, Jeff Hasty, Alexander Hoffmann, Lev S. Tsimring
2013	—	`conf`	Orbital analysis of Oxo and Peroxo Dicopper Complexes via Quantum Chemical Workflows in MoSGrid. IWSG Sonja Herres-Pawlis, Alexander Hoffmann, Richard Grunzke, Lars Packschies
2013	—	`conf`	User-Friendly Workflows in Quantum Chemistry. IWSG Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Jens Krüger, Ákos Balaskó, Péter Kacsuk, Richard Grunzke, Georg Birkenheuer, Lars Packschies
2013	C	`conf`	User-friendly metaworkflows in quantum chemistry. CLUSTER Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Luis de la Garza, Jens Krüger, Richard Grunzke
2009	A*	`conf`	TypeRight: a keyboard with tactile error prevention. CHI Alexander Hoffmann, Daniel Spelmezan, Jan O. Borchers
2008	—	`conf`	Building a Framework for Actions and Roles in Organizational Knowledge Transfer. Knowledge Management In Action Alexander Hoffmann
2008	—	`conf`	Classification of Communication Defects in DWH Projects. AMCIS Alexander Hoffmann, Wolf Behrmann