Alexander Churkin

19 papers B 1Journal 14Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	The bioinformatics of the finding that the hepatitis delta virus RNA editing mechanism by a conformational switch exists in genotype 7 in addition to genotype 3. Briefings Bioinform. Rami Zakh, Alexander Churkin, Marina Parr, Tamir Tuller, Ohad Etzion, Harel Dahari, Danny Barash
2024	—	`conf`	Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. RECOMB-CG Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller
2022	J	`jnl`	IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations. BMC Bioinform. Alexander Churkin, Yann Ponty, Danny Barash
2020	B	`conf`	The HHD Dataset. ICFHR Irina Rabaev, Berat Kurar Barakat, Alexander Churkin, Jihad El-Sana
2020	J	`jnl`	incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs. Bioinform. Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash
2018	—	`conf`	A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations. ISBRA Alexander Churkin, Danny Barash
2018	J	`jnl`	Design of RNAs: comparing programs for inverse RNA folding. Briefings Bioinform. Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash
2017	J	`jnl`	A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics. Frontiers Appl. Math. Stat. Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash
2012	J	`jnl`	Efficient procedures for the numerical simulation of mid-size RNA kinetics. Algorithms Mol. Biol. Iddo Aviram, Ilia Veltman, Alexander Churkin, Danny Barash
2012	J	`jnl`	On topological indices for small RNA graphs. Comput. Biol. Chem. Alexander Churkin, Idan Gabdank, Danny Barash
2011	J	`jnl`	Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction. Briefings Bioinform. Danny Barash, Alexander Churkin
2011	J	`jnl`	RNAexinv: An Extended Inverse RNA Folding from Shape and Physical Attributes to Sequences. BMC Bioinform. Assaf Avihoo, Alexander Churkin, Danny Barash
2011	J	`jnl`	The RNAmute web server for the mutational analysis of RNA secondary structures. Nucleic Acids Res. Alexander Churkin, Idan Gabdank, Danny Barash
2010	J	`jnl`	Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV. J. Bioinform. Comput. Biol. Alexander Churkin, Moriah Cohen, Yonat Shemer-Avni, Danny Barash
2008	J	`jnl`	An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions. BMC Bioinform. Alexander Churkin, Danny Barash
2006	J	`jnl`	RNAmute: RNA secondary structure mutation analysis tool. BMC Bioinform. Alexander Churkin, Danny Barash
2006	J	`jnl`	Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute. EURASIP J. Adv. Signal Process. Alexander Churkin, Danny Barash
2005	—	`conf`	Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin. CVPR Workshops Alexander Churkin, Danny Barash
2005	—	`conf`	RNAMute: RNA Secondary Structure Mutation Analysis Tool. CSB Workshops Alexander Churkin, Ornit Elgad, Oshrat Petgho, Danny Barash