Alexander Artyomenko

12 papers B 1Journal 3Unranked 8
YearRankTypeTitle / Venue / Authors
2017 — conf
Agent-Based in Silico Evolution of HCV Quasispecies.
ISBRA
Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky
2017 — conf
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning.
ICCABS
Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums
2017 J jnl
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.
J. Comput. Biol.
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2016 B conf
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.
RECOMB
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2015 — conf
2SNV: Quasispecies reconstruction from PacBio reads.
ICCABS
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2015 J jnl
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
2014 — conf
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.
ICCABS
Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov
2014 — conf
Deterministic regression algorithm for transcriptome frequency estimation.
ICCABS
Adrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky
2014 — conf
Reconstruction of influenza a virus variants from PacBio reads.
ICCABS
Alexander Artyomenko, Serghei Mangul, Nicholas C. Wu, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2013 — conf
Estimation of viral population structure from amplicon-based reads.
ICCABS
Nicholas Mancuso, Alexander Artyomenko, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu
2013 J jnl
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform.
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky
2013 — conf
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies.
ICCABS
Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu