Alessandro Pedretti

15 papers Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
GENEOnet: Statistical analysis supporting explainability and trustworthiness.
CoRR
Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Carmine Talarico
2025 J jnl
Prediction of UGT-mediated phase II metabolism via ligand- and structure-based predictive models.
J. Cheminformatics
Ludovica Bono, Filippo Lunghini, Emanuela Sabato, Akash Deep Biswas, Angelica Mazzolari, Alessandro Pedretti, Andrea Rosario Beccari, Giulio Vistoli, Serena Vittorio
2024 J jnl
"DompeKeys": a set of novel substructure-based descriptors for efficient chemical space mapping, development and structural interpretation of machine learning models, and indexing of large databases.
J. Cheminformatics
Candida Manelfi, Valerio Tazzari, Filippo Lunghini, Carmen Cerchia, Anna Fava, Alessandro Pedretti, Pieter F. W. Stouten, Giulio Vistoli, Andrea Rosario Beccari
2024 — conf
A geometric XAI approach to protein pocket detection.
xAI (Late-breaking Work, Demos, Doctoral Consortium)
Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Gianluca Palermo, Davide Gadioli, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Anna Fava, Carmine Talarico
2024 J jnl
Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation.
J. Chem. Inf. Model.
Ya Chen, Thomas Seidel, Roxane Axel Jacob, Steffen Hirte, Angelica Mazzolari, Alessandro Pedretti, Giulio Vistoli, Thierry Langer, Filip Miljkovic, Johannes Kirchmair
2024 — conf
MUSA: A Platform for Data-Intensive Services in Edge-Cloud Continuum.
AINA (5)
Marco Anisetti, Claudio A. Ardagna, Massimo Banzi, Filippo Berto, Ruslan Bondaruc, Ernesto Damiani, Alessandro Pedretti, Arianna Pisati, Antonio Retico
2022 J jnl
GENEOnet: A new machine learning paradigm based on Group Equivariant Non-Expansive Operators. An application to protein pocket detection.
CoRR
Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Carmine Talarico
2021 J jnl
The VEGA suite of programs: an versatile platform for cheminformatics and drug design projects.
Bioinform.
Alessandro Pedretti, Angelica Mazzolari, Silvia Gervasoni, Laura Fumagalli, Giulio Vistoli
2019 J jnl
FAME 3: Predicting the Sites of Metabolism in Synthetic Compounds and Natural Products for Phase 1 and Phase 2 Metabolic Enzymes.
J. Chem. Inf. Model.
Martin Sícho, Conrad Stork, Angelica Mazzolari, Christina de Bruyn Kops, Alessandro Pedretti, Bernard Testa, Giulio Vistoli, Daniel Svozil, Johannes Kirchmair
2018 J jnl
WarpEngine, a Flexible Platform for Distributed Computing Implemented in the VEGA Program and Specially Targeted for Virtual Screening Studies.
J. Chem. Inf. Model.
Alessandro Pedretti, Angelica Mazzolari, Giulio Vistoli
2017 J jnl
Binding Space Concept: A New Approach To Enhance the Reliability of Docking Scores and Its Application to Predicting Butyrylcholinesterase Hydrolytic Activity.
J. Chem. Inf. Model.
Giulio Vistoli, Angelica Mazzolari, Bernard Testa, Alessandro Pedretti
2016 J jnl
A computational model to predict the immune system activation by citrus-derived vaccine adjuvants.
Bioinform.
Francesco Pappalardo, Epifanio Fichera, Nicoletta Paparone, Alessandro Lombardo, Marzio Pennisi, Giulia Russo, Marco Leotta, Alessandro Pedretti, Francesco De Fiore, Santo Motta
2014 J jnl
SPILLO-PBSS: Detecting hidden binding sites within protein 3D-structures through a flexible structure-based approach.
J. Comput. Chem.
Alessandro Di Domizio, Alessandro Vitriolo, Giulio Vistoli, Alessandro Pedretti
2010 J jnl
Homology modeling and metabolism prediction of human carboxylesterase-2 using docking analyses by
J. Comput. Aided Mol. Des.
Giulio Vistoli, Alessandro Pedretti, Angelica Mazzolari, Bernard Testa
2004 J jnl
VEGA - An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming.
J. Comput. Aided Mol. Des.
Alessandro Pedretti, Luigi Villa, Giulio Vistoli