Alessandro Pandini

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
MDGraphEmb: a toolkit for graph embedding and classification of protein conformational ensembles.
Bioinform.
Ferdoos Hossein Nezhad, Namir Oues, Massimiliano Meli, Alessandro Pandini
2025 J jnl
SOMMD: an R package for the analysis of molecular dynamics simulations using self-organizing map.
Bioinform.
Stefano Motta, Lara Callea, Shaziya Ismail Mulla, Hamid Davoudkhani, Laura Bonati, Alessandro Pandini
2024 J jnl
MDavocado: Analysis and Visualization of Protein Motion by Time-Dependent Angular Diagrams.
J. Chem. Inf. Model.
Boris Gomaz, Alessandro Pandini, Aleksandra Marsavelski, Zoran Stefanic
2024 J jnl
PyCoM: a python library for large-scale analysis of residue-residue coevolution data.
Bioinform.
Philipp E. Glass, Sabriyeh Alibai, Alessandro Pandini, Sarath Chandra Dantu
2023 J jnl
MDSubSampler:
Bioinform.
Namir Oues, Sarath Chandra Dantu, Riktaben Jigarkumar Patel, Alessandro Pandini
2021 J jnl
Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites.
J. Chem. Inf. Model.
Eunice Cho, Margarida Rosa, Ruhi Anjum, Saman Mehmood, Mariya Soban, Moniza Mujtaba, Khair Bux, Syed Tarique Moin, Mohammad Tanweer, Sarath Chandra Dantu, Alessandro Pandini, Junqi Yin, Heng Ma, Arvind Ramanathan, Barira Islam, Antonia S. J. S. Mey, Debsindhu Bhowmik, Shozeb M. Haider
2019 J jnl
Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II.
PLoS Comput. Biol.
Alessandro Pandini, Howard Schulman, Shahid Khan
2018 — conf
Deep Autoencoders for Additional Insight into Protein Dynamics.
ICANN (2)
Mihai Teletin, Gabriela Czibula, Maria-Iuliana Bocicor, Silvana Iuliana Albert, Alessandro Pandini
2018 J jnl
In silico identification of rescue sites by double force scanning.
Bioinform.
Matteo Tiberti, Alessandro Pandini, Franca Fraternali, Arianna Fornili
2018 J jnl
Ligand-induced perturbation of the HIF-2α: ARNT dimer dynamics.
PLoS Comput. Biol.
Stefano Motta, Claudia Minici, Dario Corrada, Laura Bonati, Alessandro Pandini
2013 J jnl
GSATools: analysis of allosteric communication and functional local motions using a structural alphabet.
Bioinform.
Alessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung
2011 J jnl
Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps.
BMC Bioinform.
Domenico Fraccalvieri, Alessandro Pandini, Fabio Stella, Laura Bonati
2011 J jnl
Predicting the accuracy of protein-ligand docking on homology models.
J. Comput. Chem.
Annalisa Bordogna, Alessandro Pandini, Laura Bonati
2010 J jnl
Structural alphabets derived from attractors in conformational space.
BMC Bioinform.
Alessandro Pandini, Arianna Fornili, Jens Kleinjung
2007 J jnl
MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.
Bioinform.
Alessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung