Aleksandra A. Galitsyna

13 papers Journal 7Unranked 6
YearRankTypeTitle / Venue / Authors
2024 J jnl
Bioframe: operations on genomic intervals in
Bioinform.
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev
2024 J jnl
Cooltools: Enabling high-resolution Hi-C analysis in Python.
PLoS Comput. Biol.
Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A. Oksuz, Sergey Venev, Yao Xiao
2024 J jnl
Pairtools: From sequencing data to chromosome contacts.
PLoS Comput. Biol.
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev
2023 J jnl
HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases.
Briefings Bioinform.
Victoria A Kobets, Sergey V. Ulianov, Aleksandra A. Galitsyna, Semen A. Doronin, Elena A. Mikhaleva, Mikhail S. Gelfand, Yuri Y. Shevelyov, Sergey V. Razin, Ekaterina E. Khrameeva
2021 J jnl
Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.
PLoS Comput. Biol.
Pavel I. Kos, Aleksandra A. Galitsyna, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin, Alexander V. Chertovich
2021 J jnl
Single-cell Hi-C data analysis: safety in numbers.
Briefings Bioinform.
Aleksandra A. Galitsyna, Mikhail S. Gelfand
2020 J jnl
A machine learning framework for the prediction of chromatin folding in
PeerJ Comput. Sci.
Michal Rozenwald, Aleksandra A. Galitsyna, Grigory V. Sapunov, Ekaterina E. Khrameeva, Mikhail S. Gelfand
2020 — conf
HiChew: a Tool for TAD Clustering in Embryogenesis.
ISBRA
Nikolai S. Bykov, Olga M. Sigalova, Mikhail S. Gelfand, Aleksandra A. Galitsyna
2018 — conf
Large-scale analysis of RNA-DNA interactions.
BIBM
Aleksandra A. Galitsyna, Anastasia Zharikova, Maria Logacheva, Sergey V. Razin, Andrey Mironov, Alexey Gavrilov
2018 — conf
Nuclear lamina maintains global spatial organization of chromatin in Drosophila cultured cells.
BIBM
Sergey V. Ulianov, Semen A. Doronin, Ekaterina E. Khrameeva, Pavel I. Kos, Sergey S. Starikov, Aleksandra A. Galitsyna, Artem Luzhin, Mikhail S. Gelfand, Alexander V. Chertovich, Sergey V. Razin, Yuri Y. Shevelyov
2018 — conf
Reconstruction of the chromatin 3D conformation from single cell Hi-C data.
BIBM
Pavel I. Kos, Aleksandra A. Galitsyna, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin, Alexander V. Chertovich
2018 — conf
Single-cell Hi-C demonstrates that TADs are stable units of Drosophila genome folding that persist in individual cells.
BIBM
Vlada S. Zakharova, Aleksandra A. Galitsyna, Kirill E. Polovnikov, Ekaterina E. Khrameeva, Mariya D. Logacheva, Elena A. Mikhaleva, Egor S. Vassetzky, Aleksey A. Gavrilov, Yuri Y. Shevelev, Sergey K. Nechaev, Sergey V. Ulianov, Sergey V. Razin
2018 — conf
The chromatin structure of Dictyostelium discoideum.
BIBM
Olga Tsoy, Aleksandra A. Galitsyna, Ekaterina Khrameeva, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin