Alejandro Fernández Villaverde

31 papers Misc 1Journal 28Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Corrigendum to "Controllability and accessibility analysis of nonlinear biosystems" [Computer Methods and Programs in Biomedicine 242 (2023) 107837].
Comput. Methods Programs Biomed.
Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro Fernández Villaverde
2022 J jnl
Smooth Non Linear High Gain Observers for a Class of Dynamical Systems.
IEEE Access
José Antonio González-Prieto, Alejandro Fernández Villaverde
2021 J jnl
On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading.
PLoS Comput. Biol.
Alejandro Fernández Villaverde, Gemma Massonis
2021 J jnl
Structural identifiability and observability of compartmental models of the COVID-19 pandemic.
Annu. Rev. Control.
Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde
2020 J jnl
Finding and Breaking Lie Symmetries: Implications for Structural Identifiability and Observability in Biological Modelling.
Symmetry
Gemma Massonis, Alejandro Fernández Villaverde
2020 J jnl
Nonlinear observability algorithms with known and unknown inputs: analysis and implementation.
CoRR
Nerea Martínez, Alejandro Fernández Villaverde
2020 J jnl
Repairing dynamic models: a method to obtain identifiable and observable reparameterizations with mechanistic insights.
CoRR
Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde
2019 J jnl
Benchmarking optimization methods for parameter estimation in large kinetic models.
Bioinform.
Alejandro Fernández Villaverde, Fabian Fröhlich, Daniel Weindl, Jan Hasenauer, Julio R. Banga
2019 J jnl
Computational Methods for Identification and Modelling of Complex Biological Systems.
Complex.
Alejandro Fernández Villaverde, Carlo Cosentino, Attila Gábor, Gábor Szederkényi
2019 J jnl
Input-Dependent Structural Identifiability of Nonlinear Systems.
IEEE Control. Syst. Lett.
Alejandro Fernández Villaverde, Neil D. Evans, Michael J. Chappell, Julio R. Banga
2019 J jnl
Observability and Structural Identifiability of Nonlinear Biological Systems.
Complex.
Alejandro Fernández Villaverde
2018 J jnl
PREMER: A Tool to Infer Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga
2017 J jnl
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models.
PLoS Comput. Biol.
David Henriques, Alejandro Fernández Villaverde, Miguel Rocha, Julio Saez-Rodriguez, Julio R. Banga
2017 J jnl
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation.
PLoS Comput. Biol.
Alejandro Fernández Villaverde, Julio R. Banga
2017 J jnl
Dynamical compensation and structural identifiability: analysis, implications, and reconciliation.
CoRR
Alejandro Fernández Villaverde, Julio R. Banga
2017 J jnl
Dynamical compensation in biological systems as a particular case of structural non-identifiability.
CoRR
Alejandro Fernández Villaverde, Julio R. Banga
2017 J jnl
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems.
BMC Syst. Biol.
Attila Gábor, Alejandro Fernández Villaverde, Julio R. Banga
2016 — conf
PREMER: Parallel Reverse Engineering of Biological Networks with Information Theory.
CMSB
Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga
2016 J jnl
Structural Identifiability of Dynamic Systems Biology Models.
PLoS Comput. Biol.
Alejandro Fernández Villaverde, Antonio Barreiro, Antonis Papachristodoulou
2015 J jnl
A consensus approach for estimating the predictive accuracy of dynamic models in biology.
Comput. Methods Programs Biomed.
Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga
2015 J jnl
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.
BMC Syst. Biol.
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
2015 J jnl
Enabling network inference methods to handle missing data and outliers.
BMC Bioinform.
Abel Folch-Fortuny, Alejandro Fernández Villaverde, Alberto Ferrer, Julio R. Banga
2014 J jnl
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology.
CoRR
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
2014 Misc conf
High-Confidence Predictions in Systems Biology Dynamic Models.
PACBB
Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga
2014 J jnl
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.
BMC Bioinform.
Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Aidan MacNamara, Diana-Patricia Danciu, Julio R. Banga, Julio Saez-Rodriguez
2013 J jnl
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.
CoRR
Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Julio R. Banga, Julio Saez-Rodriguez
2012 J jnl
A cooperative strategy for parameter estimation in large scale systems biology models.
BMC Syst. Biol.
Alejandro Fernández Villaverde, Jose A. Egea, Julio R. Banga
2011 J jnl
Reset Control for Passive Bilateral Teleoperation.
IEEE Trans. Ind. Electron.
Alejandro Fernández Villaverde, Antonio Barreiro Blas, Joaquín Carrasco, Alfonso Baños Torrico
2010 J jnl
Passive position error correction in Internet-based teleoperation.
Autom.
Alejandro Fernández Villaverde, Antonio Barreiro, Cesáreo Raimúndez
2010 J jnl
Thermodynamics and Fluctuations Far From Equilibrium.
Entropy
John Ross, Alejandro Fernández Villaverde
2009 — conf
Reset control for injecting dissipation into port-hamiltonian systems.
ECC
Cesáreo Raimúndez, Antonio Barreiro, Alejandro Fernández Villaverde