Alejandro F. Villaverde

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
Assessment of Computational Tools for Analysing the Observability and Accessibility of Nonlinear Models.
Comput.
Mahmoud Shams Falavarjani, Adriana González Vázquez, Alejandro F. Villaverde
2024 J jnl
Analysing control-theoretic properties of nonlinear synthetic biology circuits.
CoRR
Antón Pardo, Sandra Díaz-Seoane, Dorin A. Ionescu, Antonis Papachristodoulou, Alejandro F. Villaverde
2024 J jnl
Observability rank conditions for analysing practical identifiability a priori.
CoRR
Alejandro F. Villaverde
2023 J jnl
Assessment of Prediction Uncertainty Quantification Methods in Systems Biology.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alejandro F. Villaverde, Elba Raimúndez-Álvarez, Jan Hasenauer, Julio R. Banga
2023 J jnl
Benchmarking tools for a priori identifiability analysis.
Bioinform.
Xabier Rey-Barreiro, Alejandro F. Villaverde
2023 J jnl
Controllability and accessibility analysis of nonlinear biosystems.
Comput. Methods Programs Biomed.
Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro F. Villaverde
2023 J jnl
Distilling identifiable and interpretable dynamic models from biological data.
PLoS Comput. Biol.
Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga
2023 J jnl
Improving dynamic predictions with ensembles of observable models.
Bioinform.
Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga
2023 J jnl
On the Origins and Rarity of Locally but Not Globally Identifiable Parameters in Biological Modeling.
IEEE Access
Xabier Rey-Barreiro, Alejandro F. Villaverde
2023 J jnl
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability.
Bioinform.
Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde
2022 J jnl
A protocol for dynamic model calibration.
Briefings Bioinform.
Alejandro F. Villaverde, Dilan Pathirana, Fabian Fröhlich, Jan Hasenauer, Julio R. Banga
2022 J jnl
Benchmarking tools for a priori identifiability analysis.
CoRR
Xabier Rey-Barreiro, Alejandro F. Villaverde
2022 J jnl
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability.
CoRR
Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde
2022 J jnl
Symmetries in Dynamic Models of Biological Systems: Mathematical Foundations and Implications.
Symmetry
Alejandro F. Villaverde
2021 J jnl
PEtab - Interoperable specification of parameter estimation problems in systems biology.
PLoS Comput. Biol.
Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl