Albin Sandelin

23 papers Journal 23
YearRankTypeTitle / Venue / Authors
2022 J jnl
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Jaime Abraham Castro-Mondragón, Rafael Riudavets Puig, Ieva Rauluseviciute, Roza Berhanu lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y. Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoît Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2021 J jnl
Publisher Correction to: TrancriptomeReconstructoR: data‑driven annotation of complex transcriptomes.
BMC Bioinform.
Maxim Ivanov, Albin Sandelin, Sebastian Marquardt
2021 J jnl
TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes.
BMC Bioinform.
Maxim Ivanov, Albin Sandelin, Sebastian Marquardt
2020 J jnl
JASPAR 2020: update of the open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Oriol Fornes, Jaime Abraham Castro-Mondragón, Aziz Khan, Robin van der Lee, Xi Zhang, Phillip Andrew Richmond, Bhavi P. Modi, Solenne Correard, Marius Gheorghe, Damir Baranasic, Walter Santana-Garcia, Ge Tan, Jeanne Chèneby, Benoît Ballester, François Parcy, Albin Sandelin, Boris Lenhard, Wyeth W. Wasserman, Anthony Mathelier
2019 J jnl
CAGEfightR: analysis of 5′-end data using R/Bioconductor.
BMC Bioinform.
Malte Thodberg, Axel Thieffry, Kristoffer Vitting-Seerup, Robin Andersson, Albin Sandelin
2019 J jnl
IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences.
Bioinform.
Kristoffer Vitting-Seerup, Albin Sandelin
2018 J jnl
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Nucleic Acids Res.
Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2018 J jnl
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Nucleic Acids Res.
Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier
2018 J jnl
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
PLoS Comput. Biol.
J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume
2017 J jnl
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Res.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David J. Arenillas, Anthony Mathelier, Yulia A. Medvedeva, Andreas Lennartsson, Finn Drabløs, Jordan A. Ramilowski, Owen J. L. Rackham, Julian Gough, Robin Andersson, Albin Sandelin, Hans Ienasescu, Hiromasa Ono, Hidemasa Bono, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, Takeya Kasukawa, Hideya Kawaji
2016 J jnl
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Anthony Mathelier, Oriol Fornes, David J. Arenillas, Chih-Yu Chen, Grégoire Denay, Jessica J. Y. Lee, Wenqiang Shi, Casper Shyr, Ge Tan, Rebecca Worsley-Hunt, Allen W. Zhang, François Parcy, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2016 J jnl
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.
Database J. Biol. Databases Curation
Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel J. L. de Hoon, Hideya Kawaji, Timo Lassmann, Fantom Consortium, Yoshihide Hayashizaki, Alistair R. R. Forrest, Piero Carninci, Albin Sandelin
2014 J jnl
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang, François Parcy, Rebecca Worsley-Hunt, David J. Arenillas, Sorana Buchman, Chih-Yu Chen, Alice Yi Chou, Hans Ienasescu, Jonathan S. Lim, Casper Shyr, Ge Tan, Michelle Zhou, Boris Lenhard, Albin Sandelin, Wyeth W. Wasserman
2014 J jnl
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
BMC Bioinform.
Kristoffer Vitting-Seerup, Bo T. Porse, Albin Sandelin, Johannes Waage
2012 J jnl
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads.
Bioinform.
Xiaobei Zhao, Albin Sandelin
2010 J jnl
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
Nucleic Acids Res.
Elodie Portales-Casamar, Supat Thongjuea, Andrew T. Kwon, David J. Arenillas, Xiaobei Zhao, Eivind Valen, Dimas Yusuf, Boris Lenhard, Wyeth W. Wasserman, Albin Sandelin
2010 J jnl
Multivariate Hawkes process models of the occurrence of regulatory elements.
BMC Bioinform.
Lisbeth Carstensen, Albin Sandelin, Ole Winther, Niels Richard Hansen
2009 J jnl
Discovery of Regulatory Elements is Improved by a Discriminatory Approach.
PLoS Comput. Biol.
Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh
2008 J jnl
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
Nucleic Acids Res.
Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin
2008 J jnl
Modeling promoter grammars with evolving hidden Markov models.
Bioinform.
Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh
2006 J jnl
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles.
Nucleic Acids Res.
Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, Boris Lenhard
2004 J jnl
ConSite: web-based prediction of regulatory elements using cross-species comparison.
Nucleic Acids Res.
Albin Sandelin, Wyeth W. Wasserman, Boris Lenhard
2004 J jnl
JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
Nucleic Acids Res.
Albin Sandelin, Wynand Alkema, Pär G. Engström, Wyeth W. Wasserman, Boris Lenhard