Alberto Zeni

16 papers A 1B 2C 2Misc 2Journal 3Unranked 6
YearRankTypeTitle / Venue / Authors
2024 B conf
Leveraging Difference Recurrence Relations for High-Performance GPU Genome Alignment.
PACT
Alberto Zeni, Seth Onken, Marco Domenico Santambrogio, Mehrzad Samadi
2024 J jnl
Starlight: A kernel optimizer for GPU processing.
J. Parallel Distributed Comput.
Alberto Zeni, Emanuele Del Sozzo, Eleonora D'Arnese, Davide Conficconi, Marco D. Santambrogio
2024 — conf
The Genomic Computing Revolution: Defining the Next Decades of Accelerating Genomics.
HPEC
Harisankar Sadasivan, Artur Klauser, Jürgen Hench, Yatish Turakhia, Gagandeep Singh, Alberto Zeni, Sarah J. Beecroft, Satish Narayanasamy, Jeff Nivala, Bob Robey, Onur Mutlu, Kristof Denolf, Sriranjani Sitaraman
2023 — conf
New Solution For a (Scaff)Old Problem: an FPGA Approach.
IPDPS Workshops
Alberto Zeni, Emanuele Del Sozzo, Beatrice Branchini, Lorenzo Di Tucci, Marco D. Santambrogio
2023 C conf
On the Genome Sequence Alignment FPGA Acceleration via KSW2z.
ISCAS
Alberto Zeni, Guido Walter Di Donato, Alessia Della Valle, Filippo Carloni, Marco D. Santambrogio
2023 J jnl
Pushing the Level of Abstraction of Digital System Design: A Survey on How to Program FPGAs.
ACM Comput. Surv.
Emanuele Del Sozzo, Davide Conficconi, Alberto Zeni, Mirko Salaris, Donatella Sciuto, Marco D. Santambrogio
2023 B conf
TSUNAMI: A GPU Implementation of the WFA Algorithm.
PACT
Giulia Gerometta, Alberto Zeni, Marco D. Santambrogio
2022 — conf
Fast Genome Analysis Leveraging Exact String Matching.
IPDPS Workshops
Beatrice Branchini, Sofia Breschi, Alberto Zeni, Marco D. Santambrogio
2022 C conf
Surfing the Wavefront of Genome Alignment.
ISCAS
Beatrice Branchini, Giulia Gerometta, Luisa Cicolini, Alberto Zeni, Emanuele Del Sozzo, Marco D. Santambrogio
2021 — conf
Optimized Implementation of the HPCG Benchmark on Reconfigurable Hardware.
Euro-Par
Alberto Zeni, Kenneth O'Brien, Michaela Blott, Marco D. Santambrogio
2021 Misc conf
The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware.
FCCM
Alberto Zeni, Guido Walter Di Donato, Lorenzo Di Tucci, Marco Rabozzi, Marco D. Santambrogio
2020 A conf
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.
IPDPS
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2020 J jnl
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.
CoRR
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2020 — conf
Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA.
IPDPS Workshops
Guido Walter Di Donato, Alberto Zeni, Lorenzo Di Tucci, Marco D. Santambrogio
2019 Misc conf
An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences.
FCCM
Alberto Zeni, Matteo Crespi, Lorenzo Di Tucci, Marco D. Santambrogio
2019 — conf
circFA: a FPGA-based circular RNA aligner.
BHI
Alberto Zeni, Francesco Peverelli, Enrico Cabri, Lorenzo Di Tucci, Luca Cerina, Marco D. Santambrogio