Alberto Santamaría-Pang

47 papers B 1Misc 1Journal 24Unranked 21

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Emergent Language Symbolic Autoencoder (ELSA) with weak supervision to model hierarchical brain networks. Comput. Biol. Medicine Ammar Ahmed Pallikonda Latheef, Alberto Santamaría-Pang, Craig K. Jones, Haris I. Sair
2025	—	`conf`	A Computationally Efficient Algorithm for Optimal Mass Transport via Wavelet-Based Multiresolution Methods. MICAI (Workshops, 2) Larruz-Medina Miguel Angel, Gabriel-Argüelles José Rigoberto, Benítez-Mariño Eloisa, Alberto Santamaría-Pang
2025	J	`jnl`	From Embeddings to Accuracy: Comparing Foundation Models for Radiographic Classification. CoRR Xue Li, Jameson Merkow, Noel C. F. Codella, Alberto Santamaría-Pang, Naiteek Sangani, Alexander Ersoy, Christopher Burt, John W. Garrett, Richard J. Bruce, Joshua D. Warner, Tyler J. Bradshaw, Ivan Tarapov, Matthew P. Lungren, Alan B. McMillan
2025	J	`jnl`	Multi-Modal Mamba Modeling for Survival Prediction (M4Survive): Adapting Joint Foundation Model Representations. CoRR Ho Hin Lee, Alberto Santamaría-Pang, Jameson Merkov, Matthew P. Lungren, Ivan Tarapov
2025	J	`jnl`	OPTIC: Optimizing Patient-Provider Triaging & Improving Communications in Clinical Operations using GPT-4 Data Labeling and Model Distillation. CoRR Alberto Santamaría-Pang, Frank Tuan, Ross Campbell, Cindy Zhang, Ankush Jindal, Roopa Surapur, Brad Holloman, Deanna Hanisch, Rae Buckley, Carisa Cooney, Ivan Tarapov, Kimberly S. Peairs, Brian Hasselfeld, Peter Greene
2025	—	`conf`	WaveFormer: A 3D Transformer with Wavelet-Driven Feature Representation for Efficient Medical Image Segmentation. MICCAI (4) Md Mahfuz Al Hasan, Mahdi Zaman, Abdul Jawad, Alberto Santamaría-Pang, Ho Hin Lee, Ivan Tarapov, Kyle B. See, Md Shah Imran, Antika Roy, Yaser Pourmohammadi Fallah, Navid Asadizanjani, Reza Forghani
2025	J	`jnl`	WaveFormer: A 3D Transformer with Wavelet-Driven Feature Representation for Efficient Medical Image Segmentation. CoRR Md Mahfuz Al Hasan, Mahdi Zaman, Abdul Jawad, Alberto Santamaría-Pang, Ho Hin Lee, Ivan Tarapov, Kyle B. See, Md Shah Imran, Antika Roy, Yaser Pourmohammadi Fallah, Navid Asadizanjani, Reza Forghani
2024	J	`jnl`	Atlas-Based Labeling of Resting-State fMRI. Brain Connect. Hrishikesh Kambli, Alberto Santamaría-Pang, Ivan Tarapov, Elham Beheshtian, Licia P. Luna, Haris I. Sair, Craig K. Jones
2024	J	`jnl`	Emergent Language Symbolic Autoencoder (ELSA) with Weak Supervision to Model Hierarchical Brain Networks. CoRR Ammar Ahmed Pallikonda Latheef, Alberto Santamaría-Pang, Craig K. Jones, Haris I. Sair
2024	J	`jnl`	Foundation Models for Biomedical Image Segmentation: A Survey. CoRR Ho Hin Lee, Yu Gu, Theodore Zhao, Yanbo Xu, Jianwei Yang, Naoto Usuyama, Cliff Wong, Mu Wei, Bennett A. Landman, Yuankai Huo, Alberto Santamaría-Pang, Hoifung Poon
2024	J	`jnl`	MedImageInsight: An Open-Source Embedding Model for General Domain Medical Imaging. CoRR Noel C. F. Codella, Ying Jin, Shrey Jain, Yu Gu, Ho Hin Lee, Asma Ben Abacha, Alberto Santamaría-Pang, Will Guyman, Naiteek Sangani, Sheng Zhang, Hoifung Poon, Stephanie L. Hyland, Shruthi Bannur, Javier Alvarez-Valle, Xue Li, John W. Garrett, Alan B. McMillan, Gaurav Rajguru, Madhu Maddi, Nilesh Vijayrania, Rehaan Bhimai, Nick Mecklenburg, Rupal Jain, Daniel Holstein, Naveen Gaur, Vijay Aski, Jenq-Neng Hwang, Thomas Lin, Ivan Tarapov, Matthew P. Lungren, Mu Wei
2023	J	`jnl`	3D-MIR: A Benchmark and Empirical Study on 3D Medical Image Retrieval in Radiology. CoRR Asma Ben Abacha, Alberto Santamaría-Pang, Ho Hin Lee, Jameson Merkow, Qin Cai, Surya Teja Devarakonda, Abdullah Islam, Julia Gong, Matthew P. Lungren, Thomas Lin, Noel C. F. Codella, Ivan Tarapov
2023	J	`jnl`	Deep Labeling of fMRI Brain Networks. CoRR Ammar Ahmed Pallikonda Latheef, Sejal Ghate, Zhipeng Hui, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2023	J	`jnl`	Region-based Contrastive Pretraining for Medical Image Retrieval with Anatomic Query. CoRR Ho Hin Lee, Alberto Santamaría-Pang, Jameson Merkow, Ozan Oktay, Fernando Pérez-García, Javier Alvarez-Valle, Ivan Tarapov
2022	—	`conf`	Deep Labeling of fMRI Brain Networks Using Cloud Based Processing. ISVC (1) Sejal Ghate, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2022	J	`jnl`	Deep Labeling of fMRI Brain Networks Using Cloud Based Processing. CoRR Sejal Ghate, Alberto Santamaría-Pang, Ivan Tarapov, Haris I. Sair, Craig K. Jones
2021	J	`jnl`	Adversarial Attacks with Time-Scale Representations. CoRR Alberto Santamaría-Pang, Jianwei Qiu, Aritra Chowdhury, James Kubricht, Peter H. Tu, Naresh Iyer, Nurali Virani
2021	—	`conf`	Emergent Symbolic Language Based Deep Medical Image Classification. ISBI Aritra Chowdhury, Alberto Santamaría-Pang, James R. Kubricht, Peter H. Tu
2020	J	`jnl`	Automated Phenotyping via Cell Auto Training (CAT) on the Cell DIVE Platform. CoRR Alberto Santamaría-Pang, Anup Sood, Dan E. Meyer, Aritra Chowdhury, Fiona Ginty
2020	J	`jnl`	ESCELL: Emergent Symbolic Cellular Language. CoRR Aritra Chowdhury, James R. Kubricht, Anup Sood, Peter H. Tu, Alberto Santamaría-Pang
2020	J	`jnl`	Emergent Languages from Pretrained Embeddings Characterize Latent Concepts in Dynamic Imagery. Int. J. Semantic Comput. James R. Kubricht, Alberto Santamaría-Pang, Chinmaya Devaraj, Aritra Chowdhury, Peter H. Tu
2020	J	`jnl`	Emergent symbolic language based deep medical image classification. CoRR Aritra Chowdhury, Alberto Santamaría-Pang, James R. Kubricht, Peter H. Tu
2020	—	`conf`	Escell: Emergent Symbolic Cellular Language. ISBI Aritra Chowdhury, James R. Kubricht, Anup Sood, Peter H. Tu, Alberto Santamaría-Pang
2020	Misc	`conf`	From Symbols to Signals: Symbolic Variational Autoencoders. ICASSP Chinmaya Devaraj, Aritra Chowdhury, Arpit Jain, James R. Kubricht, Peter H. Tu, Alberto Santamaría-Pang
2020	J	`jnl`	Symbolic Semantic Segmentation and Interpretation of COVID-19 Lung Infections in Chest CT volumes based on Emergent Languages. CoRR Aritra Chowdhury, Alberto Santamaría-Pang, James R. Kubricht, Jianwei Qiu, Peter H. Tu
2020	—	`conf`	Towards Emergent Language Symbolic Semantic Segmentation and Model Interpretability. MICCAI (1) Alberto Santamaría-Pang, James Kubricht, Aritra Chowdhury, Chitresh Bhushan, Peter H. Tu
2020	J	`jnl`	Towards Emergent Language Symbolic Semantic Segmentation and Model Interpretability. CoRR Alberto Santamaría-Pang, James Kubricht, Aritra Chowdhury, Chitresh Bhushan, Peter H. Tu
2019	B	`conf`	A Learning Approach to Interactive Advertising. AVSS Peter H. Tu, Donald Hamilton, Tao Gao, Alex Chen, Justin Foehner, Alberto Santamaría-Pang, James Kubricht
2019	—	`conf`	Automated Phenotyping via Cell Auto Training (CAT) on the Cell DIVE Platform. BIBM Alberto Santamaría-Pang, Anup Sood, Dan E. Meyer, Aritra Chowdhury, Fiona Ginty
2019	—	`conf`	Towards Semantic Action Analysis via Emergent Language. AIVR Alberto Santamaría-Pang, James R. Kubricht, Chinmaya Devaraj, Aritra Chowdhury, Peter H. Tu
2017	—	`conf`	A computational study on convolutional feature combination strategies for grade classification in colon cancer using fluorescence microscopy data. Digital Pathology Aritra Chowdhury, Christopher J. Sevinsky, Alberto Santamaría-Pang, Bülent Yener
2017	—	`conf`	Blood vessel characterization using virtual 3D models and convolutional neural networks in fluorescence microscopy. ISBI Aritra Chowdhury, Dmitry V. Dylov, Qing Li, Michael MacDonald, Dan E. Meyer, Michael Marino, Alberto Santamaría-Pang
2017	—	`conf`	Robust single cell quantification of immune cell subtypes in histological samples. BHI Alberto Santamaría-Pang, Raghav K. Padmanabhan, Anup Sood, Michael J. Gerdes, Christopher Sevinsky, Qing Li, Nicole LaPlante, Fiona Ginty
2016	—	`conf`	Multi-channel algorithm for segmentation of tumor blood vessels using multiplexed image data. ISBI Yousef Al-Kofahi, Christopher Sevinsky, Alberto Santamaría-Pang, Fiona Ginty, Anup Sood, Qing Li
2015	J	`jnl`	Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models. Neuroinformatics Alberto Santamaría-Pang, Paul Hernandez-Herrera, Manos Papadakis, Peter Saggau, Ioannis A. Kakadiaris
2015	—	`conf`	Cell segmentation and classification by hierarchical supervised shape ranking. ISBI Alberto Santamaría-Pang, Jens Rittscher, Michael J. Gerdes, Dirk Ryan Padfield
2014	—	`conf`	Mapping for tissue based cytometry. ISBI Jens Rittscher, Alberto Santamaría-Pang
2013	—	`conf`	Cell segmentation and classification via unsupervised shape ranking. ISBI Alberto Santamaría-Pang, Yuchi Huang, Jens Rittscher
2013	J	`jnl`	Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue. Proc. Natl. Acad. Sci. USA Michael J. Gerdes, Christopher J. Sevinsky, Anup Sood, Sudeshna Adak, Musodiq O. Bello, Alexander Bordwell, Ali Can, Alex Corwin, Sean Dinn, Robert Filkins, Denise Hollman, Vidya Kamath, Sireesha Kaanumalle, Kevin B. Kenny, Melinda Larsen, Michael Lazare, Qing Li, Christina Lowes, Colin C. McCulloch, Elizabeth McDonough, Michael Montalto, Zhengyu Pang, Jens Rittscher, Alberto Santamaría-Pang, Brion D. Sarachan, Maximilian L. Seel, Antti Seppo, Kashan Shaikh, Yunxia Sui, Jingyu Zhang, Fiona Ginty
2012	—	`conf`	Tissue segmentation and classification using graph-based unsupervised clustering. ISBI Daniel Margolis, Alberto Santamaría-Pang, Jens Rittscher
2010	—	`conf`	Automated liver lesion characterization using fast kVp switching dual energy computed tomography imaging. Computer-Aided Diagnosis Alberto Santamaría-Pang, Sandeep Dutta, Sokratis Makrogiannis, Amy K. Hara, William Pavlicek, Alvin C. Silva, Brian Thomsen, Scott Robertson, Darin Okerlund, David A. Langan, Rahul Bhotika
2010	J	`jnl`	Functional Morphology Analysis of the Left Anterior Descending Coronary Artery in EBCT Images. IEEE Trans. Biomed. Eng. Ioannis A. Kakadiaris, Alberto Santamaría-Pang, Amol Pednekar
2008	J	`jnl`	Denoising for 3-D Photon-Limited Imaging Data Using Nonseparable Filterbanks. IEEE Trans. Image Process. Alberto Santamaría-Pang, Teodor Stefan Bildea, Tan Shan, Ioannis A. Kakadiaris
2007	—	`conf`	Automatic Centerline Extraction of Irregular Tubular Structures Using Probability Volumes from Multiphoton Imaging. MICCAI (2) Alberto Santamaría-Pang, Costa M. Colbert, Peter Saggau, Ioannis A. Kakadiaris
2006	—	`conf`	Adaptive Frames-Based Denoising of Confocal Microscopy Data. ICASSP (2) Alberto Santamaría-Pang, Teodor Stefan Bildea, Ioannis Konstantinidis, Ioannis A. Kakadiaris
2006	—	`conf`	Automatic Reconstruction of Dendrite Morphology from Optical Section Stacks. CVAMIA S. Urban, Sean M. O'Malley, B. Walsh, Alberto Santamaría-Pang, Peter Saggau, Costa M. Colbert, Ioannis A. Kakadiaris
2004	—	`conf`	Three-Dimensional Shape-Motion Analysis of the Left Anterior Descending Coronary Artery in EBCT Images. MICCAI (2) Ioannis A. Kakadiaris, Amol Pednekar, Alberto Santamaría-Pang