Albert J. Kooistra

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2023 J jnl
GPCRdb in 2023: state-specific structure models using AlphaFold2 and new ligand resources.
Nucleic Acids Res.
Gáspár Pándy-Szekeres, Jimmy Caroli, Alibek Mamyrbekov, Ali A Kermani, György M. Keserü, Albert J. Kooistra, David E. Gloriam
2023 J jnl
Predicting the target landscape of kinase inhibitors using 3D convolutional neural networks.
PLoS Comput. Biol.
Georgi K. Kanev, Yaran Zhang, Albert J. Kooistra, Andreas Bender, Rob Leurs, David Bailey, Thomas Würdinger, Chris de Graaf, Iwan J. P. de Esch, Bart A. Westerman
2022 J jnl
KiSSim: Predicting Off-Targets from Structural Similarities in the Kinome.
J. Chem. Inf. Model.
Dominique Sydow, Eva Aßmann, Albert J. Kooistra, Friedrich Rippmann, Andrea Volkamer
2022 J jnl
The G protein database, GproteinDb.
Nucleic Acids Res.
Gáspár Pándy-Szekeres, Mauricio Esguerra, Alexander S. Hauser, Jimmy Caroli, Christian Munk, Steven Pilger, György M. Keserü, Albert J. Kooistra, David E. Gloriam
2021 J jnl
GPCRdb in 2021: integrating GPCR sequence, structure and function.
Nucleic Acids Res.
Albert J. Kooistra, Stefan Mordalski, Gáspár Pándy-Szekeres, Mauricio Esguerra, Alibek Mamyrbekov, Christian Munk, György M. Keserü, David E. Gloriam
2021 J jnl
KLIFS: an overhaul after the first 5 years of supporting kinase research.
Nucleic Acids Res.
Georgi K. Kanev, Chris de Graaf, Bart A. Westerman, Iwan J. P. de Esch, Albert J. Kooistra
2017 J jnl
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine.
J. Chem. Inf. Model.
Ross McGuire, Stefan Verhoeven, Márton Vass, Gerrit Vriend, Iwan J. P. de Esch, Scott J. Lusher, Rob Leurs, Lars Ridder, Albert J. Kooistra, Tina Ritschel, Chris de Graaf
2016 J jnl
KLIFS: a structural kinase-ligand interaction database.
Nucleic Acids Res.
Albert J. Kooistra, Georgi K. Kanev, Oscar P. J. van Linden, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
2015 J jnl
Analyzing Multitarget Activity Landscapes Using Protein-Ligand Interaction Fingerprints: Interaction Cliffs.
J. Chem. Inf. Model.
Oscar Méndez-Lucio, Albert J. Kooistra, Chris de Graaf, Andreas Bender, José L. Medina-Franco
2015 J jnl
Combinatorial Consensus Scoring for Ligand-Based Virtual Fragment Screening: A Comparative Case Study for Serotonin 5-HT
J. Chem. Inf. Model.
Sabine Schultes, Albert J. Kooistra, Henry F. Vischer, Saskia Nijmeijer, Eric E. J. Haaksma, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
2015 J jnl
Structure-Based Prediction of G-Protein-Coupled Receptor Ligand Function: A β-Adrenoceptor Case Study.
J. Chem. Inf. Model.
Albert J. Kooistra, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
2012 J jnl
Virtual Fragment Screening: Discovery of Histamine H
J. Chem. Inf. Model.
Francesco Sirci, Enade P. Istyastono, Henry F. Vischer, Albert J. Kooistra, Saskia Nijmeijer, Martien Kuijer, Maikel Wijtmans, Raimund Mannhold, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
2010 J jnl
Electron Density Fingerprints (EDprints): Virtual Screening Using Assembled Information of Electron Density.
J. Chem. Inf. Model.
Albert J. Kooistra, Thomas W. Binsl, Johannes H. G. M. van Beek, Chris de Graaf, Jaap Heringa