Alba Cristina Magalhaes Alves de Melo

94 papers A 8B 8C 9Misc 7Journal 28Unranked 33
YearRankTypeTitle / Venue / Authors
2025 — conf
A Framework for Reproducible Parallel DNA String Matching.
BIOSTEC (1)
Ricardo Régis Cavalcante Chaves, Alba Cristina Magalhaes Alves de Melo
2024 — conf
HiCOMB 2024 Preface and Committees.
IPDPS (Workshops)
Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman
2023 J jnl
AFMC: An alignment framework for multiple computing services and providers.
Concurr. Comput. Pract. Exp.
Leonardo Rebouças de Carvalho, Alba Cristina Magalhaes Alves de Melo, Aletéia P. F. Araújo
2019 — conf
APDCM 2019 Keynote Talk.
IPDPS Workshops
Alba Cristina Magalhaes Alves de Melo
2019 — conf
Introduction to HiCOMB 2019.
IPDPS Workshops
Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman
2019 J jnl
MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL.
Concurr. Comput. Pract. Exp.
Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, Genaína Nunes Rodrigues, George Luiz Medeiros Teodoro, Alba Cristina Magalhaes Alves de Melo
2018 J jnl
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurr. Comput. Pract. Exp.
Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2018 J jnl
DNA sequences alignment in multi-GPUs: acceleration and energy payoff.
BMC Bioinform.
Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón
2018 J jnl
Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms.
Comput. J.
Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter, Xavier Martorell, Eduard Ayguadé, Alba Cristina Magalhaes Alves de Melo
2018 J jnl
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment.
J. Parallel Distributed Comput.
Daniel Sundfeld, Caina Razzolini, George Teodoro, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2017 C conf
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment.
PDP
Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo
2017 J jnl
Dohko: an autonomic system for provision, configuration, and management of inter-cloud environments based on a software product line engineering method.
Clust. Comput.
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
2017 — conf
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis.
IWBBIO (2)
Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón
2016 — conf
Autonomic Provisioning, Configuration, and Management of Inter-cloud Environments Based on a Software Product Line Engineering Method.
ICCAC
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
2016 J jnl
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters.
IEEE Trans. Parallel Distributed Syst.
Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo
2016 J jnl
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
Bioinform.
Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin
2016 J jnl
MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning.
ACM Trans. Parallel Comput.
Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo
2016 J jnl
Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification.
ACM Comput. Surv.
Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2016 J jnl
Power-aware server consolidation for federated clouds.
Concurr. Comput. Pract. Exp.
Alessandro Ferreira Leite, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Christine Eisenbeis, Claude Tadonki, Célia Ghedini Ralha
2015 B conf
Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method.
CLOUD
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
2015 Misc conf
Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions.
CISIS
Daniel Sundfeld, George Teodoro, Alba Cristina Magalhaes Alves de Melo
2015 Misc conf
Parallel Megabase DNA Sequence Comparison with OpenCL.
HiPC
Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo
2014 J jnl
A Framework for Adaptive Fault-Tolerant Execution of Workflows in the Grid: Empirical and Theoretical Analysis.
J. Grid Comput.
Felipe Pontes Guimarães, Pedro Célestin, Daniel Macêdo Batista, Genaína Nunes Rodrigues, Alba Cristina Magalhaes Alves de Melo
2014 J jnl
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison.
Expert Syst. Appl.
Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha, Alba Cristina Magalhaes Alves de Melo
2014 B conf
CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters.
CCGRID
Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé
2014 — conf
Excalibur: an autonomic cloud architecture for executing parallel applications.
CloudDP@EuroSys
Alessandro Ferreira Leite, Tainá Raiol, Claude Tadonki, Maria Emília M. T. Walter, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
2014 B conf
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs.
PPoPP
Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé
2014 — conf
HiCOMB Introduction and Committees.
IPDPS Workshops
Alba Cristina Magalhaes Alves de Melo, Srinivas Aluru, David A. Bader
2014 J jnl
Querying dynamic communities in online social networks.
J. Zhejiang Univ. Sci. C
Li Weigang, Edans F. de O. Sandes, Jianya Zheng, Alba Cristina Magalhaes Alves de Melo, Lorna Uden
2013 — conf
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome.
BSB
Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido
2013 — conf
Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment.
IPDPS Workshops
Fernando Machado Mendonca, Alba Cristina Magalhaes Alves de Melo
2013 — conf
MSA-GPU: Exact Multiple Sequence Alignment Using GPU.
BSB
Daniel Sundfeld, Alba Cristina Magalhaes Alves de Melo
2013 J jnl
Multiple biological sequence alignment in heterogeneous multicore clusters with user-selectable task allocation policies.
J. Supercomput.
Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche
2013 J jnl
Parallel Smith-Waterman Comparison on Multicore and Manycore Computing Platforms with BSP++.
Int. J. Parallel Program.
Khaled Hamidouche, Fernando Machado Mendonca, Joel Falcou, Alba Cristina Magalhaes Alves de Melo, Daniel Etiemble
2013 J jnl
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU.
IEEE Trans. Parallel Distributed Syst.
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
2013 — conf
Topic 11: Multicore and Manycore Programming - (Introduction).
Euro-Par
Luiz De Rose, Jan Treibig, William Jalby, Alba Cristina Magalhaes Alves de Melo, David Abramson, Alastair F. Donaldson, Tomàs Margalef
2012 J jnl
A Protein Sequence Analysis Hardware Accelerator Based on Divergences.
Int. J. Reconfigurable Comput.
Juan Fernando Eusse Giraldo, Nahri Moreano, Alba Cristina Magalhaes Alves de Melo, Ricardo Pezzuol Jacobi
2012 J jnl
An architecture for P2P bag-of-tasks execution with multiple task allocation policies in desktop grids.
Clust. Comput.
Alessandro Ferreira Leite, Hammurabi das Chagas Mendes, Weigang Li, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche
2012 — conf
Energy-Aware Multi-Agent Server Consolidation in Federated Clouds.
CloudComp
Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo
2012 J jnl
Exact Parallel Alignment of megabase genomic Sequences with Tunable Work Distribution.
Int. J. Found. Comput. Sci.
Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo, Felipe Brandt Scarel, Lavir Antonio Bahia Carvalho de Souza
2012 Misc conf
Executing a biological sequence comparison application on a federated cloud environment.
HiPC
Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo
2012 B conf
Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner.
WISE
Edans Flavius de Oliveira Sandes, Li Weigang, Alba Cristina Magalhaes Alves de Melo
2012 — conf
Parallel Simulated Annealing for Fragment Based Sequence Alignment.
IPDPS Workshops
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche
2012 Misc conf
Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm.
ICNC
Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo, Yasuaki Ito
2011 — conf
A WS-Agreement-Based QoS Auditor Negotiation Mechanism for Grids.
GRID
Alisson Andrade, Alba Cristina Magalhaes Alves de Melo
2011 — conf
A fragment based alignment in linear space.
BIBM Workshops
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche
2011 — conf
Hybrid MPI/OpenMP Strategy for Biological Multiple Sequence Alignment with DIALIGN-TX in Heterogeneous Multicore Clusters.
IPDPS Workshops
Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche
2011 A conf
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space.
IPDPS
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
2011 C conf
User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid.
CIT
Felipe Pontes Guimarães, Alba Cristina Magalhaes Alves de Melo
2010 A conf
A HMMER hardware accelerator using divergences.
DATE
Juan Fernando Eusse Giraldo, Nahri Moreano, Ricardo Pezzuol Jacobi, Alba Cristina Magalhaes Alves de Melo
2010 J jnl
A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space.
IEEE Trans. Computers
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi
2010 J jnl
An adaptive multi-policy grid service for biological sequence comparison.
J. Parallel Distributed Comput.
Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche
2010 B conf
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences.
PPoPP
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
2010 C conf
Impact Analysis Model for Brasília Area Control Center using Multi-agent System with Reinforcement Learning.
SEKE
Antonio Carlos de Arruda Junior, Alessandro Ferreira Leite, Cícero Roberto Ferreira de Almeida, Alba Cristina Magalhaes Alves de Melo, Li Weigang
2010 C conf
Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm.
HPCC
Lidia A. Miranda, Marcos F. Caetano, Alba Cristina Magalhaes Alves de Melo, Jan Mendonca Correa, Jacir Luiz Bordim
2009 C conf
Bag-of-Tasks Self-Scheduling over Range-Queriable Search Overlays.
NPC
Hammurabi das Chagas Mendes, Weigang Li, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2009 A conf
Exact pairwise alignment of megabase genome biological sequences using a novel z-align parallel strategy.
IPDPS
Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo
2008 J jnl
A parallel strategy for biological sequence alignment in restricted memory space.
J. Parallel Distributed Comput.
Rodolfo Bezerra Batista, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2008 A conf
A task allocation framework for biological sequence comparison applications in heterogeneous environments.
IPDPS
Azzedine Boukerche, Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo
2008 — conf
GrAMoS: A Flexible Service for WS-Agreement Monitoring in Grid Environments.
Euro-Par
Glauber Scorsatto, Alba Cristina Magalhaes Alves de Melo
2007 C conf
A Four-layered Semantic Grid Architecture.
SEKE
Célia Ghedini Ralha, Jose Nelson C. Allemand, Alba Cristina Magalhaes Alves de Melo
2007 Misc conf
An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN.
HiPC
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha
2007 J jnl
An exact parallel algorithm to compare very long biological sequences in clusters of workstations.
Clust. Comput.
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Edans Flavius de Oliveira Sandes, Mauricio Ayala-Rincón
2007 — ch.
Bioinformatics Applications in Grid Computing Environments.
Grid Computing for Bioinformatics and Computational Biology
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2007 — conf
Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms.
BSB
Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo
2007 J jnl
Parallel strategies for the local biological sequence alignment in a cluster of workstations.
J. Parallel Distributed Comput.
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Maria Emília Telles Walter
2007 A conf
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space.
IPDPS
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha
2006 — conf
A Proposal and Evaluation of a Mechanism for Grid Ontology Merge.
HPCS
J. G. R. C. Lopes, Alba Cristina Magalhaes Alves de Melo, Mario A. R. Dantas, Célia Ghedini Ralha
2006 A conf
A multiple task allocation framework for biological sequence comparison in a grid environment.
IPDPS
Azzedine Boukerche, Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo
2006 B conf
An Extensible Resource Discovery Mechanism for Grid Computing Environments.
CCGRID
Tania Gomes Ramos, Alba Cristina Magalhaes Alves de Melo
2006 J jnl
Integrating coordinated checkpointing and recovery mechanisms into DSM synchronization barriers.
ACM J. Exp. Algorithmics
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
2006 Misc conf
PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison.
SAC
Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo
2006 C conf
Z-align: An Exact and Parallel Strategy for Local Biological Sequence Alignment in User-Restricted Memory Space.
CLUSTER
Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo
2005 — conf
Integrating Coordinated Checkpointing and Recovery Mechanisms into DSM Synchronization Barriers.
WEA
Azzedine Boukerche, Jeferson G. Koch, Alba Cristina Magalhaes Alves de Melo
2005 — conf
Method to Balance the Communication Among Multi-agents in Real Time Traffic Synchronization.
FSKD (1)
Weigang Li, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo
2005 — conf
Multiple Coherence and Coordinated Checkpointing Protocols for DSM Systems.
ICPP Workshops
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Jeferson G. Koch, Cicero Roberto de Oliveira Galdino
2005 — conf
Obtaining possible execution histories on multiple memory consistency models.
SCCC
Alba Cristina Magalhaes Alves de Melo, Nilo S. B. Silva, Hammurabi das Chagas Mendes, Diego F. Aranha
2005 — conf
Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations.
WEA
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana
2005 A conf
Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations.
IPDPS
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana
2004 A conf
A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations.
IPDPS
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista
2004 C conf
Distributed Knowledge Based System Using Grid Computing for Real Time Air Traffic Synchronization - ATFMGC.
SEKE
Weigang Li, Daniel Amaral Cardoso, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo
2004 J jnl
Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools.
J. Braz. Comput. Soc.
Alba Cristina Magalhaes Alves de Melo, Maria Emília M. T. Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista
2004 — conf
Parallel Biological Sequence Comparison in Heterogeneous Systems Using CORBA.
WOB
Andre Riccioppo, Alba Cristina Magalhaes Alves de Melo
2004 — conf
Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.
WOB
Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta
2004 B conf
Using a DSM application to locally align DNA sequences.
CCGRID
Rodolfo Bezerra Batista, D. N. Silva, Alba Cristina Magalhaes Alves de Melo, Weigang Li
2003 — conf
Comparing Two Long Biological Sequences Using a DSM System.
Euro-Par
Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista, Marcelo Nardelli Pinto Santana, Thelmo E. S. Martins, Tiago M. Fonseca
2003 C conf
Computing Binary Space Partition Trees using a Scope Consistent DSM System in a Cluster of Workstations.
PDP
Rodolfo Bezerra Batista, Alerrandro L. A. C. Correa, Alba Cristina Magalhaes Alves de Melo
2003 Misc conf
Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations.
International Conference on Computational Science
Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista
2002 — conf
Integrating Optimistic Virtual Synchrony to a CORBA Object Group Service.
OTM
Gláucia de Oliveira Dias, Alba Cristina Magalhaes Alves de Melo
2001 — conf
Application-Controlled Coherence Protocols for Scope Consistent Software DSMs.
HPCN Europe
Cicero Roberto de Oliveira Galdino, Alba Cristina Magalhaes Alves de Melo
2001 — conf
Using a Classifier System to Improve Dynamic Load Balancing.
ICPP Workshops
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo
1999 — conf
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework.
HICSS
Alba Cristina Magalhaes Alves de Melo
1999 — conf
Visual-MCM: Visualising Execution Histories on Multiple Memory Consistency Models.
ACPC
Alba Cristina Magalhaes Alves de Melo, Simone Cintra Chagas
1997 B conf
Multiple Memory Consistency Models on a SVM Parallel Programming Environment.
OPODIS
Alba Cristina Magalhaes Alves de Melo