Alba C. M. A. Melo

34 papers B 2C 5Journal 22Unranked 5

Year	Rank	Type	Title / Venue / Authors
2025	C	`conf`	PA-Star2: Fast Optimal Multiple Sequence Alignment for Asymmetric Multicore Processors. PDP Daniel Sundfeld, George Teodoro, Alba C. M. A. Melo
2025	J	`jnl`	The Megapixel Approach for Efficient Execution of Irregular Wavefront Algorithms on GPUs. IEEE Trans. Parallel Distributed Syst. Mathias Oliveira, Willian Barreiros, Renato Ferreira, Alba C. M. A. Melo, George Teodoro
2024	—	`conf`	A Framework for Automated Parallel Execution of Scientific Multi-workflow Applications in the Cloud with Work Stealing. Euro-Par (3) Helena S. Silva, Maria Clicia Stelling de Castro, Fabrício A. B. da Silva, Alba C. M. A. Melo
2024	J	`jnl`	Adaptive patch grid strategy for parallel protein folding using atomic burials with NAMD. J. Parallel Distributed Comput. Emerson de Araujo Macedo, Alba C. M. A. Melo
2024	J	`jnl`	MAS-Cloud+: A novel multi-agent architecture with reasoning models for resource management in multiple providers. Future Gener. Comput. Syst. Aldo H. D. Mendes, Michel J. F. Rosa, Marcelo Antonio Marotta, Aletéia P. F. Araújo, Alba C. M. A. Melo, Célia Ghedini Ralha
2023	J	`jnl`	A Novel Statistical and Neural Network Combined Approach for the Cloud Spot Market. IEEE Trans. Cloud Comput. Gustavo Portella, Eduardo Yoshio Nakano, Genaína Nunes Rodrigues, Azzedine Boukerche, Alba C. M. A. Melo
2023	J	`jnl`	Optimizing computational costs of Spark for SARS-CoV-2 sequences comparisons on a commercial cloud. Concurr. Comput. Pract. Exp. Alan L. Nunes, Alba C. M. A. Melo, Claude Tadonki, Cristina Boeres, Daniel de Oliveira, Lúcia Maria de Assumpção Drummond
2022	J	`jnl`	Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2021	J	`jnl`	A CPU-FPGA heterogeneous approach for biological sequence comparison using high-level synthesis. Concurr. Comput. Pract. Exp. Carlos Antônio Campos Jorge, Alexandre Solon Nery, Alba C. M. A. Melo, Alfredo Goldman
2021	—	`conf`	A Fault Tolerant and Deadline Constrained Sequence Alignment Application on Cloud-Based Spot GPU Instances. Euro-Par Rafaela C. Brum, Walisson P. Sousa, Alba C. M. A. Melo, Cristiana Bentes, Maria Clicia Stelling de Castro, Lúcia Maria de A. Drummond
2021	J	`jnl`	Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro
2021	—	`conf`	CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer. BSB Vanessa S. Silva, Maiana O. C. Costa, Maria Clicia Stelling de Castro, Helena S. Silva, Maria Emília M. T. Walter, Alba C. M. A. Melo, Kary A. C. Ocaña, Marcelo T. dos Santos, Marisa F. Nicolas, Anna Cristina C. Carvalho, Andrea Henriques-Pons, Fabrício Alves Barbosa da Silva
2021	B	`conf`	Comparing SARS-CoV-2 Sequences using a Commercial Cloud with a Spot Instance Based Dynamic Scheduler. CCGRID Luan Teylo, Alan L. Nunes, Alba C. M. A. Melo, Cristina Boeres, Lúcia Maria de A. Drummond, Natália Florencio Martins
2021	J	`jnl`	Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. IEEE Trans. Parallel Distributed Syst. Marco Antonio C. de Figueiredo, João Paulo Navarro, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo
2020	J	`jnl`	Bitmap filter: Speeding up exact set similarity joins with bitwise operations. Inf. Syst. Edans F. de O. Sandes, George Luiz Medeiros Teodoro, Alba C. M. A. Melo
2020	C	`conf`	MASA-StarPU: Parallel Sequence Comparison with Multiple Scheduling Policies and Pruning. SBAC-PAD Rafael A. Lopes, Samuel Thibault, Alba C. M. A. Melo
2020	J	`jnl`	Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2020	C	`conf`	Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. PDP Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo
2020	J	`jnl`	Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. Concurr. Comput. Pract. Exp. Daniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo
2019	J	`jnl`	Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Multiagent system for dynamic resource provisioning in cloud computing platforms. Future Gener. Comput. Syst. Célia Ghedini Ralha, Aldo H. D. Mendes, Luiz A. Laranjeira, Aletéia P. F. Araújo, Alba C. M. A. Melo
2019	J	`jnl`	Run-time Parameter Sensitivity Analysis Optimizations. CoRR Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Statistical analysis of Amazon EC2 cloud pricing models. Concurr. Comput. Pract. Exp. Gustavo Portella, Genaína Nunes Rodrigues, Eduardo Yoshio Nakano, Alba C. M. A. Melo
2019	J	`jnl`	Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. J. Comput. Biol. Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo
2019	B	`conf`	Utility-Based Strategy for Balanced Cost and Availability at the Cloud Spot Market. CLOUD Gustavo Portella, Eduardo Yoshio Nakano, Genaína Nunes Rodrigues, Alba C. M. A. Melo
2018	J	`jnl`	Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2017	J	`jnl`	Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. Bioinform. George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Yi Gao
2017	J	`jnl`	Bitmap Filter: Speeding up Exact Set Similarity Joins with Bitwise Operations. CoRR Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo
2017	—	`conf`	Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. AlCoB Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo
2017	C	`conf`	Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz
2016	J	`jnl`	Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz
2011	C	`ed.`	23rd International Symposium on Computer Architecture and High Performance Computing, SBAC-PAD 2011, Vitória, Espírito Santo, Brazil, October 26-29, 2011 SBAC-PAD Jean-Luc Gaudiot, Alba C. M. A. Melo, Alberto F. De Souza, Lucia Catabriga
2002	—	`conf`	Using ant-behavior-based simulation model AntWeb to improve website organization. Data Mining and Knowledge Discovery: Theory, Tools, and Technology Weigang Li, Marcos Vinícius Pinheiro Dib, Wesley Martins Teles, Vlaudemir Morais de Andrade, Alba C. M. A. Melo, Judas T. Cariolano