Alan Veliz-Cuba

23 papers Journal 21Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification.
SIAM J. Appl. Dyn. Syst.
Alan Veliz-Cuba, Vanessa Newsome-Slade, Elena S. Dimitrova
2024 J jnl
Algebraic Experimental Design: Theory and Computation.
SIAM J. Appl. Algebra Geom.
Elena S. Dimitrova, Cameron H. Fredrickson, Nicholas A. Rondoni, Brandilyn Stigler, Alan Veliz-Cuba
2024 J jnl
Algebraic network reconstruction of discrete dynamical systems.
Adv. Appl. Math.
Heather A. Harrington, Mike Stillman, Alan Veliz-Cuba
2022 J jnl
An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE.
Patterns
David Murrugarra, Alan Veliz-Cuba
2019 J jnl
Dynamics of semilattice networks with strongly connected dependency graph.
Autom.
Alan Veliz-Cuba, Reinhard C. Laubenbacher
2017 J jnl
Bistability and oscillations in co-repressive synthetic microbial consortia.
Quant. Biol.
Mehdi Sadeghpour, Alan Veliz-Cuba, Gábor Orosz, Kresimir Josic, Matthew R. Bennett
2017 J jnl
Evidence Accumulation and Change Rate Inference in Dynamic Environments.
Neural Comput.
Adrian E. Radillo, Alan Veliz-Cuba, Kresimir Josic, Zachary P. Kilpatrick
2016 J jnl
Identification of control targets in Boolean molecular network models via computational algebra.
BMC Syst. Biol.
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher
2016 J jnl
Stochastic Models of Evidence Accumulation in Changing Environments.
SIAM Rev.
Alan Veliz-Cuba, Zachary P. Kilpatrick, Kresimir Josic
2016 J jnl
The Number of Fixed Points of AND-OR Networks with Chain Topology.
CoRR
Alan Veliz-Cuba, Lauren Geiser
2015 J jnl
Networks that learn the precise timing of event sequences.
J. Comput. Neurosci.
Alan Veliz-Cuba, Harel Z. Shouval, Kresimir Josic, Zachary P. Kilpatrick
2015 J jnl
Sources of Variability in a Synthetic Gene Oscillator.
PLoS Comput. Biol.
Alan Veliz-Cuba, Andrew J. Hirning, Adam A. Atanas, Faiza Hussain, Flavia Vancia, Kresimir Josic, Matthew R. Bennett
2014 — ch.
Algebraic Models and Their Use in Systems Biology.
Discrete and Topological Models in Molecular Biology
Reinhard C. Laubenbacher, Franziska Hinkelmann, David Murrugarra, Alan Veliz-Cuba
2014 — conf
Dimension Reduction of Large Sparse AND-NOT Network Models.
SASB
Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher
2014 J jnl
Steady state analysis of Boolean molecular network models via model reduction and computational algebra.
BMC Bioinform.
Alan Veliz-Cuba, Boris Aguilar, Franziska Hinkelmann, Reinhard C. Laubenbacher
2014 J jnl
Structure and dynamics of acyclic networks.
Discret. Event Dyn. Syst.
Alan Veliz-Cuba, David Murrugarra, Reinhard C. Laubenbacher
2013 J jnl
Dimension Reduction of Large AND-NOT Network Models.
CoRR
Alan Veliz-Cuba, Reinhard C. Laubenbacher, Boris Aguilar
2012 J jnl
An Algebraic Approach to Reverse Engineering Finite Dynamical Systems Arising from Biology.
SIAM J. Appl. Dyn. Syst.
Alan Veliz-Cuba
2012 J jnl
Modeling stochasticity and variability in gene regulatory networks.
EURASIP J. Bioinform. Syst. Biol.
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard C. Laubenbacher
2011 J jnl
ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra.
BMC Bioinform.
Franziska Hinkelmann, Madison Brandon, Bonny Guang, Rustin McNeill, Grigoriy Blekherman, Alan Veliz-Cuba, Reinhard C. Laubenbacher
2011 J jnl
Boolean Models Can Explain Bistability in the
J. Comput. Biol.
Alan Veliz-Cuba, Brandilyn Stigler
2011 J jnl
On the relationship of steady states of continuous and discrete models
CoRR
Alan Veliz-Cuba, Joseph Arthur, Laura Hochstetler, Victoria Klomps, Erikka Korpi
2010 J jnl
Polynomial algebra of discrete models in systems biology.
Bioinform.
Alan Veliz-Cuba, Abdul Salam Jarrah, Reinhard C. Laubenbacher