Alan R. Bishop

21 papers C 2Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Examining DNA breathing with pyDNA-EPBD.
Bioinform.
Anowarul Kabir, Manish Bhattarai, Kim Ø. Rasmussen, Amarda Shehu, Anny Usheva, Alan R. Bishop, Boian S. Alexandrov
2020 J jnl
A Recursive Algebraic Coloring Technique for Hardware-efficient Symmetric Sparse Matrix-vector Multiplication.
ACM Trans. Parallel Comput.
Christie L. Alappat, Achim Basermann, Alan R. Bishop, Holger Fehske, Georg Hager, Olaf Schenk, Jonas Thies, Gerhard Wellein
2020 C conf
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors.
ISC
Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein
2020 J jnl
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors.
CoRR
Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein
2019 J jnl
A Recursive Algebraic Coloring Technique for Hardware-Efficient Symmetric Sparse Matrix-Vector Multiplication.
CoRR
Christie L. Alappat, Georg Hager, Olaf Schenk, Jonas Thies, Achim Basermann, Alan R. Bishop, Holger Fehske, Gerhard Wellein
2018 C conf
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs.
ISC
Moritz Kreutzer, Dominik Ernst, Alan R. Bishop, Holger Fehske, Georg Hager, Kengo Nakajima, Gerhard Wellein
2018 J jnl
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs.
CoRR
Moritz Kreutzer, Georg Hager, Dominik Ernst, Holger Fehske, Alan R. Bishop, Gerhard Wellein
2016 — ch.
Performance Engineering and Energy Efficiency of Building Blocks for Large, Sparse Eigenvalue Computations on Heterogeneous Supercomputers.
Software for Exascale Computing
Moritz Kreutzer, Jonas Thies, Andreas Pieper, Andreas Alvermann, Martin Galgon, Melven Röhrig-Zöllner, Faisal Shahzad, Achim Basermann, Alan R. Bishop, Holger Fehske, Georg Hager, Bruno Lang, Gerhard Wellein
2016 J jnl
The role of structural parameters in DNA cyclization.
BMC Bioinform.
Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, Boian S. Alexandrov
2014 J jnl
A Unified Sparse Matrix Data Format for Efficient General Sparse Matrix-Vector Multiplication on Modern Processors with Wide SIMD Units.
SIAM J. Sci. Comput.
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop
2014 J jnl
Non-Hermitian quantum annealing in the antiferromagnetic Ising chain.
Quantum Inf. Process.
Alexander I. Nesterov, Gennady P. Berman, Juan C. Beas Zepeda, Alan R. Bishop
2013 J jnl
A unified sparse matrix data format for modern processors with wide SIMD units.
CoRR
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop
2013 J jnl
Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics.
PLoS Comput. Biol.
Kristy Nowak-Lovato, Ludmil B. Alexandrov, Afsheen Banisadr, Amy L. Bauer, Alan R. Bishop, Anny Usheva, Fangping Mu, Elizabeth Hong-Geller, Kim Ø. Rasmussen, William S. Hlavacek, Boian S. Alexandrov
2012 — conf
Sparse Matrix-vector Multiplication on GPGPU Clusters: A New Storage Format and a Scalable Implementation.
IPDPS Workshops
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop
2011 J jnl
Sparse matrix-vector multiplication on GPGPU clusters: A new storage format and a scalable implementation
CoRR
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop
2009 J jnl
Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter.
PLoS Comput. Biol.
Boian S. Alexandrov, Vladimir Gelev, Sang Wook Yoo, Alan R. Bishop, Kim Ø. Rasmussen, Anny Usheva
2007 J jnl
Asymptotic calculation of discrete non-linear wave interactions.
Math. Comput. Simul.
Panayotis G. Kevrekidis, Avinash Khare, Avadh Saxena, I. Bena, Alan R. Bishop
2007 J jnl
Modelling the magnetic signature of neuronal tissue.
NeuroImage
K. B. Blagoev, Bogdan Mihaila, B. J. Travis, Ludmil B. Alexandrov, Alan R. Bishop, Douglas M. Ranken, Stefan Posse, Charles Gasparovic, Andy R. Mayer, Cheryl J. Aine, István Ulbert, M. Morita, W. Müller, J. Connor, Eric Halgren
2007 J jnl
Soliton trains and vortex streets as a form of Cerenkov radiation in trapped Bose-Einstein condensates.
Math. Comput. Simul.
Ricardo Carretero-González, Panayotis G. Kevrekidis, Dimitri J. Frantzeskakis, Boris A. Malomed, S. Nandi, Alan R. Bishop
2005 J jnl
Domain walls of single-component Bose-Einstein condensates in external potentials.
Math. Comput. Simul.
Panayotis G. Kevrekidis, Boris A. Malomed, Dimitri J. Frantzeskakis, Alan R. Bishop, Hector E. Nistazakis, Ricardo Carretero-González
1998 J jnl
Collective Coordinates and Length-Scale Competition in Spatially Inhomogeneous Soliton-Bearing Equations.
SIAM Rev.
Ángel Sánchez, Alan R. Bishop